Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5018
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.11c |meu23|B13958-2|DUF1773 family protein 2|Schizosacch...    29   0.46 
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    27   1.4  
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    27   2.5  
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   4.3  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    25   5.7  
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po...    25   7.5  
SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi...    25   10.0 
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy...    25   10.0 

>SPCC613.11c |meu23|B13958-2|DUF1773 family protein
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 254

 Score = 29.1 bits (62), Expect = 0.46
 Identities = 30/134 (22%), Positives = 53/134 (39%), Gaps = 7/134 (5%)
 Frame = +1

Query: 148 DYKKYHINAQQWSHIVKWDSFKCNTHSFKYRYVNNDTNAKFYNVIDFCKGLEIAHDD-IL 324
           +++K  I A+      +  + +  TH  +     N+   +F   +D    LEI  +  + 
Sbjct: 39  EFEKRRIEARNRILESEGRALENKTHLNEEEIRTNERVKRFQRRVDEWTALEIERESQVQ 98

Query: 325 DCNW----DSDQVYHLNEIIFHKQKSKRDLNSLGALFATKQGLLKILMR--VNFDNKSNA 486
              W      +Q   LN ++      +R +N++     T QG +  +    +NF NK N 
Sbjct: 99  PPLWYQRDREEQNRTLNFLMSGMADLQRTINTMQGTMNTMQGTMNTMQENMINFTNKVNT 158

Query: 487 LLHLQTEGERDDLR 528
           L       E  DLR
Sbjct: 159 LDMRSVRAENRDLR 172


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 364 EIIFHKQKSKRDLNSLGALFATKQGLLKILMRVNFDNKSN 483
           ++ FH Q+ KRD+ +L  ++ T    L  L+   F + +N
Sbjct: 79  QLEFHAQEGKRDVTNLTCVYGTSPQQLDRLITREFSSDAN 118


>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 313 RAQFQDLCKNLLHCRIL 263
           RA+F +LC N+LH R L
Sbjct: 396 RAKFNNLCSNILHFRAL 412


>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 215

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
 Frame = -2

Query: 424 RTMRPTS*DRVWISACEK*FRLN--GKLDR---CPNCNQVCRRAQFQDLCKNL 281
           RT +P   D +W +AC++   +N   K  R    P C Q+C  +Q  D   NL
Sbjct: 81  RTCQPKQHDSIWCTACQQTKGINEFSKAQRHVLDPRC-QICVHSQRNDGDDNL 132


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
 Frame = +1

Query: 400  LNSLGALFA-TKQGLLKI----LMRVNFDNKSNALLHLQTEGERDDLRDKIESVL 549
            + S G L A T+ G+ +     LMR +F+     L+     GE+DD +   E+++
Sbjct: 1381 MTSRGHLMAITRHGINRAETGALMRCSFEETVEILMDAAASGEKDDCKGISENIM 1435


>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 596

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 18/85 (21%), Positives = 37/85 (43%)
 Frame = +1

Query: 232 KYRYVNNDTNAKFYNVIDFCKGLEIAHDDILDCNWDSDQVYHLNEIIFHKQKSKRDLNSL 411
           K   +  +T     + +D  KGL+  +D       +    YH+N  +F+ +      +++
Sbjct: 423 KVNALPEETTLAVNHRVDASKGLKQVYDRYGGLLEEFGHEYHVNVTLFNGETVVEYEDAI 482

Query: 412 GALFATKQGLLKILMRVNFDNKSNA 486
           G +FA+    L+      +D  S+A
Sbjct: 483 GHIFASTAKTLEPSPVSPYDESSDA 507


>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
           Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +1

Query: 163 HINAQQWSHIVKWDSFKCNTHSF 231
           H++   WS I K+D++     S+
Sbjct: 74  HLSVDSWSSITKYDNYTVENESY 96


>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 327

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +1

Query: 292 KGLEIAHDDILDCNWDSDQVYHLNEIIFHKQKSK 393
           KGL+     + DC  +   +YH+ E++  ++ +K
Sbjct: 191 KGLKEVRRIVEDCMHNIHPIYHIKELMIKRELAK 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,000,421
Number of Sequences: 5004
Number of extensions: 37279
Number of successful extensions: 123
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)