Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5017
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.18c |bet3||TRAPP complex subunit Bet3 |Schizosaccharomyc...   126   2e-30
SPBC1718.05 |trs31||TRAPP complex subunit Trs31 |Schizosaccharom...    38   0.001
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   1.5  
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    27   2.6  
SPBC215.14c |vps20||vacuolar sorting protein Vps20|Schizosacchar...    26   3.4  
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    25   6.0  
SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   7.9  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    25   7.9  
SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|ch...    25   7.9  

>SPAC644.18c |bet3||TRAPP complex subunit Bet3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 183

 Score =  126 bits (305), Expect = 2e-30
 Identities = 64/140 (45%), Positives = 97/140 (69%), Gaps = 3/140 (2%)
 Frame = +2

Query: 164 KVNSELLTLTYGALVSQMLKETENTEDVNKHLERIGYNMGVRLIEDFLARTTSTRCLEMR 343
           KVN+EL  LTYG++V+Q+ K+  N E VN+ L+++GYN+G+RLIEDFLA+T   RC + R
Sbjct: 16  KVNAELFVLTYGSIVAQLCKDM-NYEKVNEELDKMGYNIGIRLIEDFLAKTEWPRCADFR 74

Query: 344 ETADKIQQ-AFKLYLSMQPTVTSWSSAGDEFSLVWDHCPLSEWVEMPSN--NGLKYCALI 514
           ET + + +  FK++L+  P ++S S  G+ F L  D  PL+E+VE+P++    L Y  ++
Sbjct: 75  ETGETVAKVGFKVFLNFSPIISSVSDDGNTFVLTLDDNPLAEFVELPADARQKLWYSNIL 134

Query: 515 PGAIRGALQMGQLDVQCWFV 574
            G IRGAL+M Q+DV   F+
Sbjct: 135 CGVIRGALEMLQMDVDAVFL 154


>SPBC1718.05 |trs31||TRAPP complex subunit Trs31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 37.5 bits (83), Expect = 0.001
 Identities = 29/133 (21%), Positives = 58/133 (43%), Gaps = 5/133 (3%)
 Frame = +2

Query: 167 VNSELLTLTYGALVSQMLKETENTEDVNKHLERIGYNMGVRLIEDFLARTTS----TRCL 334
           VN       +  L+ ++  +    ++  + L   GY +G +L+E  + R  +    TR L
Sbjct: 41  VNLSSFAFIFSELIQRIQSQVSGIQEFEEKLNEHGYRVGQKLVELVVWRERNPKRETRIL 100

Query: 335 EMRETADKIQQAFKLYLSMQPTVTSWSSAGDEFSLVWDHCPLSEWVEMPSN-NGLKYCAL 511
            + +        + L+     ++     A DE+ +V ++  L++++ +P   N L  CA 
Sbjct: 101 GILQYIHSSVWKY-LFGKHADSLEKSKEASDEYMIVDNNPLLNKFISVPKEMNQLNCCAY 159

Query: 512 IPGAIRGALQMGQ 550
           + G I G L   Q
Sbjct: 160 LAGIIEGFLDSAQ 172


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 329  CLEMRETADKIQQAFKLYLSMQPTVTSWSSAGDEFSLVWDHCPLSEW 469
            C+E   ++DK+    KL   ++P    W++ GD  +   D   LS W
Sbjct: 1090 CVEFL-SSDKVLNQPKLKADLEPYRIDWANGGDLVNSEKDASELSRW 1135


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 169 NFLGVQSRSLPRHFVETCCRI 107
           N +G Q+    RHF+++C R+
Sbjct: 343 NLIGFQTEEYKRHFLQSCSRV 363


>SPBC215.14c |vps20||vacuolar sorting protein
           Vps20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 226

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +2

Query: 152 LDAKKVNSELLTLTYGAL--VSQMLKETENTEDVNKHLERIGYNMGVRLIEDFLA 310
           L AKK+ S L+T TYG L  + Q+L   E T  + K +   G   G  LI    A
Sbjct: 59  LKAKKLYSGLITQTYGQLGNIEQLLSTIEFTL-IQKDV-MFGLQEGTNLIRQLQA 111


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 169 NFLGVQSRSLPRHFVETCCRI 107
           +F+G +  S  RHF+  C R+
Sbjct: 268 DFIGFEDYSYARHFISCCSRV 288


>SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 263

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 3/122 (2%)
 Frame = +2

Query: 206 VSQMLKETENTEDVNKHLERIGYNMGVRLIEDFLARTTSTRCLEMRETADKIQQAFKLYL 385
           V Q+L ET   +   K L     +    L  ++++    T    +R T   +  + K Y+
Sbjct: 55  VKQVLDETLPKKGYEKALHSFIIHEDPSL--NYISALKETAKERIRVTVP-VYSSRKSYV 111

Query: 386 SMQP-TVTSWSSAGDEFS--LVWDHCPLSEWVEMPSNNGLKYCALIPGAIRGALQMGQLD 556
             +P T ++ +  G+E S  LV+    +  +V++ +N+G   CALI    +G L    + 
Sbjct: 112 QTKPITHSAENENGNETSDELVFFQHSIPAYVQLTNNHGTILCALI--LCKGMLHFDSIS 169

Query: 557 VQ 562
            Q
Sbjct: 170 FQ 171


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 458 VDSGPKQAKTHLRHYSNLL 402
           +DSGPK A    +H SN +
Sbjct: 551 IDSGPKPANNSYQHQSNFI 569


>SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +2

Query: 200 ALVSQMLKETENTEDVNKHLERIGYNMG--VRLIEDFLARTT 319
           +L   +L   +NT++  +HLE   +N    + +I  FL+R T
Sbjct: 2   SLAFTLLTSKDNTDEDEEHLELSSFNQEKLLEMISVFLSRLT 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,246,366
Number of Sequences: 5004
Number of extensions: 43816
Number of successful extensions: 141
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)