Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5017
(575 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1458 + 26677557-26677616,26677712-26677809,26678569-266786... 136 1e-32
03_03_0283 - 16192534-16192656,16192979-16193161,16193336-161934... 136 1e-32
10_08_0939 + 21696941-21697049,21697171-21697255,21698385-216984... 31 0.66
08_02_1556 - 27852247-27852738,27853005-27853197,27854006-278540... 29 2.7
06_03_1221 - 28514952-28518152 29 3.5
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975... 28 4.6
08_02_1358 - 26372559-26372887,26373183-26373262,26373287-263734... 28 4.6
06_02_0164 + 12498614-12498699,12498806-12498842,12499388-124995... 28 4.6
04_04_1565 - 34451411-34451875,34454077-34455249,34455340-34455402 28 4.6
03_05_1059 - 30020877-30021539,30022367-30022375 28 6.1
01_01_1059 - 8356328-8356645,8357567-8357865,8358119-8358124,835... 28 6.1
11_06_0350 + 22573760-22575262 27 8.1
09_02_0214 + 5846531-5846872,5847660-5847708,5847975-5848090,584... 27 8.1
>07_03_1458 +
26677557-26677616,26677712-26677809,26678569-26678668,
26678841-26679023,26679347-26679469
Length = 187
Score = 136 bits (329), Expect = 1e-32
Identities = 62/140 (44%), Positives = 99/140 (70%), Gaps = 2/140 (1%)
Frame = +2
Query: 161 KKVNSELLTLTYGALVSQMLKETENTEDVNKHLERIGYNMGVRLIEDFLARTTSTRCLEM 340
++VN+EL TLTYGA+V Q+L + E E+VNK L+++GYN+G RL+++FLA++ +RC++
Sbjct: 18 ERVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMGYNIGTRLVDEFLAKSNVSRCVDF 77
Query: 341 RETADKIQQ-AFKLYLSMQPTVTSWSSAGDEFSLVWDHCPLSEWVEMPSN-NGLKYCALI 514
+ETAD I + FK++L + TVT+W + G S V + PL ++VE+P GL+YC ++
Sbjct: 78 KETADVIAKLGFKMFLGVTATVTNWDAEGTSCSFVLEDNPLVDFVELPDTCQGLQYCNVL 137
Query: 515 PGAIRGALQMGQLDVQCWFV 574
G IRGAL+M + + +V
Sbjct: 138 SGVIRGALEMVSMKTEVTWV 157
>03_03_0283 -
16192534-16192656,16192979-16193161,16193336-16193435,
16194627-16194724,16194841-16194900
Length = 187
Score = 136 bits (329), Expect = 1e-32
Identities = 62/140 (44%), Positives = 99/140 (70%), Gaps = 2/140 (1%)
Frame = +2
Query: 161 KKVNSELLTLTYGALVSQMLKETENTEDVNKHLERIGYNMGVRLIEDFLARTTSTRCLEM 340
++VN+EL TLTYGA+V Q+L + E E+VNK L+++GYN+G RL+++FLA++ +RC++
Sbjct: 18 ERVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMGYNIGTRLVDEFLAKSNVSRCVDF 77
Query: 341 RETADKIQQ-AFKLYLSMQPTVTSWSSAGDEFSLVWDHCPLSEWVEMPSN-NGLKYCALI 514
+ETAD I + FK++L + TVT+W + G S V + PL ++VE+P GL+YC ++
Sbjct: 78 KETADVIAKLGFKMFLGVTATVTNWDAEGTSCSFVLEDNPLVDFVELPDTCQGLQYCNVL 137
Query: 515 PGAIRGALQMGQLDVQCWFV 574
G IRGAL+M + + +V
Sbjct: 138 SGVIRGALEMVSMKTEVTWV 157
>10_08_0939 +
21696941-21697049,21697171-21697255,21698385-21698457,
21698553-21698609,21698660-21698713,21699196-21699246,
21699441-21699503,21700453-21700518,21700625-21700663,
21702190-21702271,21703479-21703536,21703698-21703914,
21704248-21704697
Length = 467
Score = 31.1 bits (67), Expect = 0.66
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -1
Query: 164 SW-RPI*KFAETFCRNVLQNLYNFLYSFVKFSKNLLITYA 48
SW P+ + A+T C+ V+QNL++F VK K L Y+
Sbjct: 81 SWLMPLQEQADTVCKKVIQNLHHFYLCTVKKMKELRKGYS 120
>08_02_1556 -
27852247-27852738,27853005-27853197,27854006-27854070,
27854161-27854199,27854572-27854592,27854819-27855052,
27855420-27855504,27855953-27856026,27856516-27856647,
27856735-27856834,27857296-27857361,27857472-27857509,
27858013-27858219,27858378-27858427,27858871-27858940,
27859065-27859133,27859456-27859530,27860456-27860530,
27860887-27860934
Length = 710
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -3
Query: 477 ISTHSLSGQWSQTSENSSPALLQLV 403
+ST + + SQTS NSSP LLQ++
Sbjct: 419 VSTSNTTSGQSQTSNNSSPILLQML 443
>06_03_1221 - 28514952-28518152
Length = 1066
Score = 28.7 bits (61), Expect = 3.5
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +2
Query: 158 AKKVNSELLTLTYGALVSQMLKETENTEDVNKHLE-RIGYNMGVRLIEDFLARTTSTRCL 334
AK N L LTY ++ E+ + K E R+G+N + L+ TS RCL
Sbjct: 273 AKLTNLITLDLTYNMFTGEL---PESISQLTKLEELRLGHNDFTGTLPPALSNWTSLRCL 329
Query: 335 EMRETA 352
++R +
Sbjct: 330 DLRSNS 335
>09_06_0198 - 21496692-21496991,21497111-21497258,21497341-21497578,
21497679-21497889,21497977-21498170,21498263-21498364,
21498525-21499879,21501193-21501494,21501600-21501750,
21501838-21502102,21502155-21502362,21502467-21502660,
21502749-21502850,21503481-21503680,21504010-21504846,
21505806-21506107,21506209-21506359,21506447-21506684,
21506764-21506971,21507078-21507271,21507322-21507462,
21513484-21514811,21515923-21516227,21516331-21516481,
21516570-21516807,21516881-21517088,21517197-21517366,
21517451-21517549,21517708-21519029,21521601-21521683
Length = 3314
Score = 28.3 bits (60), Expect = 4.6
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +2
Query: 302 FLARTTSTRCLEMRETADKIQQAFKLYLSMQPTVTSWSSAGDEFSLVWDHCPLSEWVEMP 481
+LA T +T L++ + D+I ++ PT +S+G+ L WD SEW+
Sbjct: 2705 YLAATGTTIYLDVVDNDDEIYVKLRVSDGASPTRYVMTSSGEFQLLGWDKSS-SEWITFS 2763
Query: 482 S 484
S
Sbjct: 2764 S 2764
>08_02_1358 -
26372559-26372887,26373183-26373262,26373287-26373420,
26373546-26373689,26373809-26373919,26374165-26374305,
26376839-26376964,26377072-26377263
Length = 418
Score = 28.3 bits (60), Expect = 4.6
Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Frame = -1
Query: 218 AFETLKPHT*ELG----ALN*LSWRPI*KFAETFCRNVLQNLYNFLYSFVKFSKNLLITY 51
AF+T K H L A+ W + TFCR N Y+ L SF +L Y
Sbjct: 260 AFQTNKNHFYSLESSPVAMELTYWPQVSNLVRTFCRKPGMNCYDLLTSFTAVRDGVLTKY 319
>06_02_0164 +
12498614-12498699,12498806-12498842,12499388-12499544,
12499964-12500181,12500965-12501891
Length = 474
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 3/32 (9%)
Frame = -2
Query: 307 QEVLYQSNAHVVSDSLKMF---VYIFSVFCFF 221
++VL+Q NA ++S+ M+ VYIFS+FC F
Sbjct: 115 RQVLHQENAEA-ANSVSMWMGTVYIFSLFCAF 145
>04_04_1565 - 34451411-34451875,34454077-34455249,34455340-34455402
Length = 566
Score = 28.3 bits (60), Expect = 4.6
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +2
Query: 245 VNKHLERIGYNMGVRLIEDFLARTTSTRCLEMRETADKIQQAFKLYLSMQPTVT 406
V+K+L I + G+R + FLA S RE D + +A +YL PT+T
Sbjct: 367 VDKYLGEISPDHGLR-VSKFLAVAESLPD-SARECYDGVYRALDIYLESHPTLT 418
>03_05_1059 - 30020877-30021539,30022367-30022375
Length = 223
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = -3
Query: 570 NQHCTSNCPICRAPLIAPGIKAQ---YFRPLLLGISTHSLSGQWSQTSENSSPALLQL 406
+Q C CPICR+P+ G + + Y++ L G+ + ++ + ++S P L +
Sbjct: 56 SQRCDV-CPICRSPIPDTGNRVRLRLYYKCLEAGLISKQHDERFQEKEDHSDPVNLDV 112
>01_01_1059 -
8356328-8356645,8357567-8357865,8358119-8358124,
8358276-8358720,8359722-8360036
Length = 460
Score = 27.9 bits (59), Expect = 6.1
Identities = 18/76 (23%), Positives = 37/76 (48%)
Frame = +2
Query: 200 ALVSQMLKETENTEDVNKHLERIGYNMGVRLIEDFLARTTSTRCLEMRETADKIQQAFKL 379
A+ + ++ E E+ KH E + + E+ + R T+ R + R+ + ++Q+FK
Sbjct: 335 AMELAIARDKEEDEENYKHRESLR-----EMRENHMKRVTAMRSMHSRKWDEFLEQSFKR 389
Query: 380 YLSMQPTVTSWSSAGD 427
+ PT + +S D
Sbjct: 390 HQQAHPTSYAQTSYPD 405
>11_06_0350 + 22573760-22575262
Length = 500
Score = 27.5 bits (58), Expect = 8.1
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = +2
Query: 92 KESYTNSATRFYKMSRQTS--RLDAKKVNSELL--TLTYGALVSQMLKETENTE 241
K++YT+ + K+ R T R+ + V + ++TYGAL+S + KE+ E
Sbjct: 326 KQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRLEE 379
>09_02_0214 +
5846531-5846872,5847660-5847708,5847975-5848090,
5848169-5848282,5849050-5849100,5849746-5849834,
5849911-5849971,5850103-5850180,5850334-5850441,
5850832-5850957
Length = 377
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 283 R*TDRGLPGPDNVYSLLRNERNC 351
R D+ LP PDN+ SL + E C
Sbjct: 238 RHVDKALPPPDNICSLFQLENGC 260
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,250,484
Number of Sequences: 37544
Number of extensions: 274123
Number of successful extensions: 853
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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