Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5016
(712 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr 1||... 32 0.070
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 32 0.070
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 30 0.28
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 30 0.38
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 30 0.38
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac... 30 0.38
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 29 0.50
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 29 0.50
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 29 0.66
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 29 0.66
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 29 0.87
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce... 28 1.1
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S... 28 1.5
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 27 2.0
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 27 2.6
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 27 2.6
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos... 26 4.6
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 26 4.6
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 26 6.1
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom... 26 6.1
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 26 6.1
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe... 26 6.1
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 25 8.1
SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|ch... 25 8.1
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 25 8.1
>SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr
1|||Manual
Length = 197
Score = 32.3 bits (70), Expect = 0.070
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Frame = +1
Query: 46 LGEL-QLKQKIMEEQNKKRKEMIAKALADRTKQTEEEVMKLEKIKK-ELQVLDSQFSQDV 219
LG L + +Q+ EQ RK A+ K+ E+E+ +LEK +K E ++L+S+ +
Sbjct: 81 LGTLGKFQQESEREQKSARKVKRAELEEKLAKRREQELQELEKQEKIEAEILESRLQEQR 140
Query: 220 SVLRKKIDQACLSYADAEKQYLRVEKEFLNAKIQ 321
V +D+ L D +K + +L K Q
Sbjct: 141 KV---ALDELELDRNDLKKVLDNKKSYYLRTKTQ 171
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 32.3 bits (70), Expect = 0.070
Identities = 33/180 (18%), Positives = 72/180 (40%), Gaps = 2/180 (1%)
Frame = +1
Query: 16 EHELASHKVKLGELQLKQKIMEEQNKKRKEMIAKALADRTKQTEEEVMKLEKIKKELQVL 195
E +L + K + +L+ EE + +E++ + + ++ +K E + KE +
Sbjct: 1278 ESQLQTEKAAVKKLENSN---EEYKRHNQEILLSLNSSTSTSSDASRLKNELVSKENLI- 1333
Query: 196 DSQFSQDVSVLRKKIDQACLSYADAEKQYLRVEK--EFLNAKIQXXXXXXXXXXXXXXXC 369
+ +Q++ L+ +++ D E + + + E L K
Sbjct: 1334 -EELNQEIGHLKSELETVKSKSEDLENERAQNQSKIEQLELKNTKLAAAWRTKYEQVVNK 1392
Query: 370 ALITHNEMRKAQKLETLMLELANEKKNEINEALTLNDDNPVIIDGVDERTGKMVEINTNK 549
+L HN++R+ +T LE + +++NE L P + T + E N+ K
Sbjct: 1393 SLEKHNQIRQQLSQKTSELEAKVAECHQLNEQLNKPSATPTATTQSEPSTVSLEEFNSTK 1452
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 30.3 bits (65), Expect = 0.28
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Frame = +1
Query: 61 LKQKIMEEQNKKRKEMIAKA-LADRTKQTEEEVMKLEKIKKELQVLDSQFSQDVSVLRKK 237
LKQ+I + Q + E + K L Q V KLE + L+ +DV ++ K
Sbjct: 372 LKQQIEQLQRELASETVVKENLKSSLDQQSANVQKLESTNRALESTIKTLEEDVYTMKNK 431
Query: 238 ID--QACLSYADAEKQYLRVEK 297
I + L A+ E+ L VEK
Sbjct: 432 IIELEGILKSANVERDGL-VEK 452
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 29.9 bits (64), Expect = 0.38
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Frame = +1
Query: 34 HKVKLGELQLKQKIMEEQNKKRK----EMIAKALADRTKQTEEE--VMKLEKIKKELQVL 195
H K Q ++ EE+ KKR + +AL ++ K+ +E+ ++ LE+ K ++L
Sbjct: 21 HSTKTSHDQFEET--EEEIKKRSPEELKQAIEALREKAKEKKEKERILALEEKKTNYKIL 78
Query: 196 DSQFSQDVSVLRKKIDQACL 255
+ +RK DQA L
Sbjct: 79 QKSNDETAQAMRKMQDQARL 98
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 29.9 bits (64), Expect = 0.38
Identities = 25/114 (21%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
Frame = +1
Query: 1 DFQYTEHELASHKVKLGEL---QLKQKIMEEQNKKRKEMIAKA----LADRTKQTEEEVM 159
D Q E EL + L E K +++ EQ + ++ + +A ++ + E ++
Sbjct: 510 DLQNKEEELTELRKLLREQTQDSQKLRLLVEQLELERQDLKQAGENHYSNLSSDYETQIK 569
Query: 160 KLEKIKKELQVLDSQFSQDVSVLRKKIDQACLSYADAEKQYLRVEKEFLNAKIQ 321
LE Q F + ++ L +ID+ L +A K+Y + F N+ ++
Sbjct: 570 SLESSLTNSQAECVSFQEKINELNSQIDELKLKLNEANKKYQELAISFENSNVK 623
>SPCC1393.02c |||non-specific DNA binding protein Spt2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 406
Score = 29.9 bits (64), Expect = 0.38
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = +1
Query: 7 QYTEHELASHKVKLGELQLKQKIMEEQNKKRKEMIAKALADRTKQTEEE-VMKLEKIKKE 183
+ TE K++ E +L+QK EEQ ++++ M AK +A T+QT E + E+ K+
Sbjct: 39 EITEERNRQRKLQR-ERELRQKYEEEQ-RRQQAMEAKRIAASTRQTSERPPLSAEEAKRI 96
Query: 184 LQV 192
+V
Sbjct: 97 REV 99
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 29.5 bits (63), Expect = 0.50
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = +1
Query: 52 ELQLKQKIMEEQNKKRKE-MIAKA--LADRTKQTEEEVMKLEKIKKE 183
ELQ + + +EE+N K KE +K L ++ K TE EV L K +E
Sbjct: 624 ELQKRLQTLEEENNKAKEDSTSKTSNLLEQLKMTEAEVDSLRKENEE 670
Score = 25.4 bits (53), Expect = 8.1
Identities = 15/62 (24%), Positives = 32/62 (51%)
Frame = +1
Query: 52 ELQLKQKIMEEQNKKRKEMIAKALADRTKQTEEEVMKLEKIKKELQVLDSQFSQDVSVLR 231
E + K+ +++E R ++ +K + K T+E V++ + EL +D + +LR
Sbjct: 393 ERREKEALLQELESLRVQL-SKKVPMPAKNTDERVIETLQRSNELLRMDISMQNEALLLR 451
Query: 232 KK 237
K+
Sbjct: 452 KQ 453
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 29.5 bits (63), Expect = 0.50
Identities = 15/60 (25%), Positives = 36/60 (60%)
Frame = +1
Query: 67 QKIMEEQNKKRKEMIAKALADRTKQTEEEVMKLEKIKKELQVLDSQFSQDVSVLRKKIDQ 246
+K++++ KKRK++IAK L + + E K+++ K+ L+ + +++ L +K+ +
Sbjct: 64 EKVLKKW-KKRKKLIAKGLLEPFDAEDNEAKKMKREKEILRQQRQKRKSELTQLSQKVKE 122
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 29.1 bits (62), Expect = 0.66
Identities = 19/71 (26%), Positives = 36/71 (50%)
Frame = +1
Query: 94 KRKEMIAKALADRTKQTEEEVMKLEKIKKELQVLDSQFSQDVSVLRKKIDQACLSYADAE 273
KRKE A + + + E KL++ E + L S+ + +S LRK+ D+ + + +
Sbjct: 630 KRKEEQLNAQLSQLENLQNEERKLQEKVNEHESLLSRTNDILSTLRKERDEKLIPIHEWQ 689
Query: 274 KQYLRVEKEFL 306
+ R+E + L
Sbjct: 690 QLQERIEHQTL 700
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 29.1 bits (62), Expect = 0.66
Identities = 15/65 (23%), Positives = 32/65 (49%)
Frame = +1
Query: 16 EHELASHKVKLGELQLKQKIMEEQNKKRKEMIAKALADRTKQTEEEVMKLEKIKKELQVL 195
E H+ +L + +K +EE N+K++E+ + L ++ ++ K L +L
Sbjct: 361 EERQRQHEERLKRINANKKALEELNQKKRELAQQQLKEQELLMQKIKETDRSGNKRLMLL 420
Query: 196 DSQFS 210
++Q S
Sbjct: 421 ETQHS 425
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 28.7 bits (61), Expect = 0.87
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Frame = +1
Query: 67 QKIMEEQNKKRKEMIAKAL--ADRTKQTEEEVMKLEKIKKELQVLDSQFSQDVSVLRKKI 240
+K E N + +E + A A+ +E + K ++ Q+LDS+ S R
Sbjct: 836 RKANEIMNNRSEEFLRNAASQAEIVGANKERIQKT--VENGSQLLDSKSKAIHSNSRSMY 893
Query: 241 DQACLSYADAEKQYLRVEKEFLNAKIQ 321
D CL+ A+++KQ + +E + L+ +Q
Sbjct: 894 DH-CLALAESQKQGVNLEVQTLDRLLQ 919
>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 357
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +1
Query: 67 QKIMEEQNKKRKEMIAKALADRTKQTEEEVMKLEKIKKELQVLDSQFSQDVSVLRKKIDQ 246
+K M+E K E K+ + K T+E + L I +E+ + D+S L +K+D+
Sbjct: 201 RKSMDEWRKSMDEW-RKSTDEWRKSTDERLENLLNIVREILDVQRDMRNDLSNLTRKVDR 259
>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/65 (20%), Positives = 34/65 (52%)
Frame = +1
Query: 82 EQNKKRKEMIAKALADRTKQTEEEVMKLEKIKKELQVLDSQFSQDVSVLRKKIDQACLSY 261
++N +++ I + L + T+E++ K+ I+ + ++ + +L KK++ C +
Sbjct: 314 KENVEKRTEIDEYLQIQPLPTDEDIKKIPLIEDDTSFMNVNPDELEELLEKKLNSFCDDF 373
Query: 262 ADAEK 276
D E+
Sbjct: 374 GDDER 378
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 27.5 bits (58), Expect = 2.0
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Frame = +1
Query: 52 ELQLKQ-KIMEEQNKKRKEMIAKALADRTKQTEEEVMKLEKIKKELQVLDSQFSQDVSVL 228
ELQ+ K MEEQ + +K K ++ K+ E+ K+E++ E S +V L
Sbjct: 91 ELQVSDSKEMEEQLELQKSQFEKRISILEKEKEDLQRKMEELTVE--------SMEVVRL 142
Query: 229 RKKIDQACLSYADAEKQYLRVEKE 300
++++ Y+ Q++R +++
Sbjct: 143 TRQVETLSTQYSIQRSQWVREDEK 166
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 27.1 bits (57), Expect = 2.6
Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Frame = +1
Query: 16 EHELASHKVKLGELQLKQKIMEEQNKKRKEMIA--KALADRTKQTEEEVMKLEKIKKELQ 189
+++L ++L +L+ ++E+ K ++ K + EEE L + +E +
Sbjct: 254 KYQLFMKGIQLKQLEENYSLIEQSLINTKNVLGNKKTGVSYLAKKEEEYKLLWEQSRETE 313
Query: 190 VLDSQFSQDVSVLRKKIDQACLSYADAEKQYLRVEKEFLNAKIQ 321
L + Q KK + + EK+ L EKEF +A+++
Sbjct: 314 NLHNLLEQ------KKGEMVWAQVVEVEKELLLAEKEFQHAEVK 351
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +1
Query: 64 KQKIMEEQNKKRKEMIAKALADRTKQTEEEVMKL--EKIKKEL 186
K I E+ ++RKE+ + LA+ ++ EEE + E+ +EL
Sbjct: 767 KNVIDAERERQRKEIFEQKLAEAIREAEEEAARAAEEEANREL 809
>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 640
Score = 26.2 bits (55), Expect = 4.6
Identities = 14/35 (40%), Positives = 25/35 (71%)
Frame = +1
Query: 91 KKRKEMIAKALADRTKQTEEEVMKLEKIKKELQVL 195
K+ K + KA+ + K+ +++V +LEKI+KEL V+
Sbjct: 119 KEVKGYVKKAV-EMIKRRDKKVKELEKIQKELLVV 152
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 26.2 bits (55), Expect = 4.6
Identities = 17/84 (20%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Frame = +1
Query: 1 DFQYTEHELASHKVKLGELQLKQKIMEEQNKKRKEMIAKALADRTKQTEEEVMKLEKIKK 180
D + TE ++ + K +++ K+ E + K ++ +K AD+ +QT+ + + K
Sbjct: 476 DSKETEDKVEETESKEADVKAKETDSIEVDDKEEKTDSKETADKVEQTDSKDTNEKPAKD 535
Query: 181 ELQVLDSQFSQ-DVSVLRKKIDQA 249
+ + + + + D +++KI++A
Sbjct: 536 DNKEANEKAEKVDSKDVKEKIEEA 559
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 25.8 bits (54), Expect = 6.1
Identities = 17/64 (26%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Frame = +1
Query: 25 LASHKVKLGELQLKQKIMEEQNKKRKEMIAK--ALADRTKQTEEEVMKLEKIKKELQVLD 198
++S KVK+ + K+ E++KK+KE K L ++K+ + + +K K++++ +
Sbjct: 123 VSSKKVKVRKTSGKESSKREKSKKKKEKKEKKDKLKKKSKRLKLDDSHTQKRKRKVRDKE 182
Query: 199 SQFS 210
S+ S
Sbjct: 183 SKKS 186
>SPAC16A10.08c |mug74|SPAC589.01c|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 285
Score = 25.8 bits (54), Expect = 6.1
Identities = 18/57 (31%), Positives = 33/57 (57%)
Frame = +1
Query: 40 VKLGELQLKQKIMEEQNKKRKEMIAKALADRTKQTEEEVMKLEKIKKELQVLDSQFS 210
VKL EL+ ++ N+ + E+ ++ + TE E + + ++KKEL+ L SQF+
Sbjct: 206 VKLSELRNCINSSKDSNQIQ-ELENLLRKEKQRNTEHEKI-IRRMKKELKELHSQFN 260
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 100 KEMIAKALADRTKQTEEEVMKLEKIKKELQVLDSQ 204
+E+ L ++ E +V +L K+KKEL+ L+ +
Sbjct: 1067 QELTINNLEEKVNYLEADVKQLPKLKKELESLNDK 1101
>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 523
Score = 25.8 bits (54), Expect = 6.1
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Frame = +1
Query: 91 KKRKEMIAKALADRTKQTEE--EVMKLEKIKKELQVLDSQFSQDVSV-LRKKID 243
K+R++ +K L+ KQ EE E K E + ++VLD+ D+ + ++KK++
Sbjct: 390 KRRRKEQSKLLSFFAKQKEEKEETNKTEDVS--IEVLDNNNESDIGLTVKKKVE 441
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 25.4 bits (53), Expect = 8.1
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 115 KALADRTKQTEEEVMKLEKIKKELQVLDSQFSQDVSVLRKKIDQACLSYAD 267
K+L + E E+ +ELQ +++V +LRKK +A L AD
Sbjct: 1301 KSLGKELQNKINEKNLAEQKVEELQSQSFTKNKEVDLLRKKAQKAILKQAD 1351
>SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 401
Score = 25.4 bits (53), Expect = 8.1
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = +1
Query: 37 KVKLGELQLKQKIMEEQNKKRKEMIAKALADRTKQTEEEVMKLEKIKKELQVLDSQ---F 207
K LGE K QN+KR + + K+L D EE +KL +E L +Q
Sbjct: 90 KSTLGERLKKDSQELAQNRKRIQELEKSLGD-----AEEALKLS--NEETVTLTAQVESL 142
Query: 208 SQDVSVLRKK 237
+QD++ LR++
Sbjct: 143 TQDITDLRQQ 152
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 25.4 bits (53), Expect = 8.1
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = +1
Query: 370 ALITHNEMRKAQKLETLMLELANEKKNEINEAL 468
+++ + + LET +LE+ E KN++ E +
Sbjct: 1011 SVVLRGDKEIVEALETRLLEIVEELKNQVEEKI 1043
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,159,124
Number of Sequences: 5004
Number of extensions: 34484
Number of successful extensions: 161
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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