Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5016
         (712 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein p...    31   0.036
AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic acetylch...    29   0.19 
AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic acetylch...    29   0.19 
M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles ...    28   0.33 
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    25   1.8  
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    25   1.8  
CR954257-13|CAJ14164.1|  420|Anopheles gambiae predicted protein...    25   2.3  
AY428512-1|AAR89530.1|  420|Anopheles gambiae EKN1 protein.            25   2.3  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    24   5.4  
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    23   7.2  
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    23   7.2  

>AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein
           protein.
          Length = 541

 Score = 31.1 bits (67), Expect = 0.036
 Identities = 19/72 (26%), Positives = 37/72 (51%)
 Frame = +1

Query: 13  TEHELASHKVKLGELQLKQKIMEEQNKKRKEMIAKALADRTKQTEEEVMKLEKIKKELQV 192
           T  EL   K  + +L+ +   M+EQN +  E I +      ++ EE   + EK+K +++ 
Sbjct: 89  TTPELELLKATIQQLEEQNLEMKEQNFRLAEQITRMCQLLQEEKEEAKRREEKLKAQMEK 148

Query: 193 LDSQFSQDVSVL 228
           L +   +D ++L
Sbjct: 149 LAAAHQRDRNLL 160


>AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 28.7 bits (61), Expect = 0.19
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +3

Query: 183 TTSIGQSIFTGCVSIEEENRSS 248
           TT+IG S+FT   ++EE+N SS
Sbjct: 399 TTAIGGSVFTRLTTVEEQNVSS 420


>AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 28.7 bits (61), Expect = 0.19
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +3

Query: 183 TTSIGQSIFTGCVSIEEENRSS 248
           TT+IG S+FT   ++EE+N SS
Sbjct: 399 TTAIGGSVFTRLTTVEEQNVSS 420


>M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 574

 Score = 27.9 bits (59), Expect = 0.33
 Identities = 18/69 (26%), Positives = 33/69 (47%)
 Frame = +1

Query: 22  ELASHKVKLGELQLKQKIMEEQNKKRKEMIAKALADRTKQTEEEVMKLEKIKKELQVLDS 201
           EL   +  +  L+ +   M+EQN K  E I        ++ EE   + EK++ +++ L +
Sbjct: 116 ELELLRATIQRLEEQNCAMKEQNAKLLEQITGMCQLLQEEKEEAKRREEKLEAQMEKLAA 175

Query: 202 QFSQDVSVL 228
              +D  VL
Sbjct: 176 AHQRDRDVL 184


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 7   QYTEHEL-ASHKVKLGELQLKQKIMEEQNKKRKEMIAKALADRTKQTEEE 153
           Q   H+L  +HKVK   L+   + MEE  +KR  +   A  ++ +Q   E
Sbjct: 848 QQARHDLQTNHKVKQQALKRSTESMEE--RKRTRVALSAALEQARQEASE 895


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
 Frame = +1

Query: 43  KLGELQLKQKIMEEQNKKRKEMIAKALADRTKQTEEEV-MKLEKIKK---ELQVLDSQFS 210
           + G+L+ +  ++  +    K+ +A+    +TK+  EE+  K+E ++K   E +   +Q S
Sbjct: 709 RFGQLKEQHDMLNYELNNLKQRLAQTSFQQTKEEIEELNKKIETLQKTIVEARETQTQCS 768

Query: 211 QDVSVLRKKI 240
             V  L+ KI
Sbjct: 769 AKVKDLQAKI 778


>CR954257-13|CAJ14164.1|  420|Anopheles gambiae predicted protein
           protein.
          Length = 420

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 14/55 (25%), Positives = 32/55 (58%)
 Frame = +1

Query: 34  HKVKLGELQLKQKIMEEQNKKRKEMIAKALADRTKQTEEEVMKLEKIKKELQVLD 198
           H+ +L E Q KQ+ +E+  KK+ E+  +   +R  ++  + +  E  ++EL+ ++
Sbjct: 118 HRKRL-EQQSKQRAIEKDRKKKDEIHRQIERERADRSAIDNLLEESKQRELKRME 171


>AY428512-1|AAR89530.1|  420|Anopheles gambiae EKN1 protein.
          Length = 420

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 14/55 (25%), Positives = 32/55 (58%)
 Frame = +1

Query: 34  HKVKLGELQLKQKIMEEQNKKRKEMIAKALADRTKQTEEEVMKLEKIKKELQVLD 198
           H+ +L E Q KQ+ +E+  KK+ E+  +   +R  ++  + +  E  ++EL+ ++
Sbjct: 118 HRKRL-EQQSKQRAIEKDRKKKDEIHRQIERERADRSAIDNLLEESKQRELKRME 171


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 23.8 bits (49), Expect = 5.4
 Identities = 18/75 (24%), Positives = 32/75 (42%)
 Frame = +1

Query: 64   KQKIMEEQNKKRKEMIAKALADRTKQTEEEVMKLEKIKKELQVLDSQFSQDVSVLRKKID 243
            K+ ++ ++  +  E IA   A        + M L+ + KEL+  +    +   V +K +D
Sbjct: 928  KENMLRQKIDECTEKIAGLGALPNVDASYQKMSLKSLFKELEKANQHLKKYNHVNKKALD 987

Query: 244  QACLSYADAEKQYLR 288
            Q        EK Y R
Sbjct: 988  QFLSFSEQKEKLYKR 1002


>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative
           cytoskeletal structural protein protein.
          Length = 1645

 Score = 23.4 bits (48), Expect = 7.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 462 FINFIFLFISKFEHERFKF 406
           FINFIF+F+  F    F F
Sbjct: 52  FINFIFMFLLHFVLFSFSF 70


>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 23.4 bits (48), Expect = 7.2
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 409 LETLMLELANEKKN--EINEALTLNDDNPVIIDGVDERTGKMV 531
           +E   LELA  K     I+     N + PV+I+GV+ RT + +
Sbjct: 709 MENHCLELAPAKTELVTISSKRQGNINVPVVINGVERRTTRSI 751


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 514,673
Number of Sequences: 2352
Number of extensions: 7784
Number of successful extensions: 16
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 72758970
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)