Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5012
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...   279   4e-76
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...   277   2e-75
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    29   0.66 
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc...    28   1.2  
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    27   2.7  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    26   4.7  
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    26   4.7  
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|...    26   6.2  
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos...    26   6.2  
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    25   8.2  

>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  279 bits (683), Expect = 4e-76
 Identities = 137/191 (71%), Positives = 160/191 (83%)
 Frame = +3

Query: 66  SEREDNVYKAKLAEQAERYDEMVEAMKNVASRNVSDNELTVEERNLLSVAYKNVIGARRA 245
           + RED VY AKLAEQAERY+ MVE MK+VAS   +D ELTVEERNLLSVAYKNVIGARRA
Sbjct: 4   TSREDAVYLAKLAEQAERYEGMVENMKSVAS---TDQELTVEERNLLSVAYKNVIGARRA 60

Query: 246 SWRIISSIEQKEETKGAEDKLNMIRAYRSQVEKELRDICSDILGVLDKYLIPSSQTGESK 425
           SWRI+SSIEQKEE+KG   ++ +I+ YR ++E+EL  IC DIL VL+K+LIP++ + ESK
Sbjct: 61  SWRIVSSIEQKEESKGNTAQVELIKEYRQKIEQELDTICQDILTVLEKHLIPNAASAESK 120

Query: 426 VFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFS 605
           VFYYKMKGDY+RYLAEFA G  R+ +A+ SL  YKAAS+IA  EL PTHPIRLGLALNFS
Sbjct: 121 VFYYKMKGDYYRYLAEFAVGEKRQHSADQSLEGYKAASEIATAELAPTHPIRLGLALNFS 180

Query: 606 VFYYEILNSPD 638
           VFYYEILNSPD
Sbjct: 181 VFYYEILNSPD 191


>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  277 bits (678), Expect = 2e-75
 Identities = 135/191 (70%), Positives = 162/191 (84%)
 Frame = +3

Query: 66  SEREDNVYKAKLAEQAERYDEMVEAMKNVASRNVSDNELTVEERNLLSVAYKNVIGARRA 245
           + RE++VY AKLAEQAERY+EMVE MK VA  N   ++L+VEERNLLSVAYKN+IGARRA
Sbjct: 3   NSRENSVYLAKLAEQAERYEEMVENMKKVACSN---DKLSVEERNLLSVAYKNIIGARRA 59

Query: 246 SWRIISSIEQKEETKGAEDKLNMIRAYRSQVEKELRDICSDILGVLDKYLIPSSQTGESK 425
           SWRIISSIEQKEE++G   +  +I+ YR ++E EL DIC D+L VL+K+LIP++ TGESK
Sbjct: 60  SWRIISSIEQKEESRGNTRQAALIKEYRKKIEDELSDICHDVLSVLEKHLIPAATTGESK 119

Query: 426 VFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFS 605
           VFYYKMKGDY+RYLAEF  G   KEAA++SL AYKAASDIA+ ELPPT P+RLGLALNFS
Sbjct: 120 VFYYKMKGDYYRYLAEFTVGEVCKEAADSSLEAYKAASDIAVAELPPTDPMRLGLALNFS 179

Query: 606 VFYYEILNSPD 638
           VFYYEIL+SP+
Sbjct: 180 VFYYEILDSPE 190


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
            complex subunit Taf111|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 979

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 21/85 (24%), Positives = 38/85 (44%)
 Frame = +3

Query: 81   NVYKAKLAEQAERYDEMVEAMKNVASRNVSDNELTVEERNLLSVAYKNVIGARRASWRII 260
            N +   +A+Q   Y+E +  + N   R +S N       NL  +A K  I +    +   
Sbjct: 779  NAHAYNVAKQQRAYEEEINRIWNAQKRGLSIN-------NLEELAKKYGINSIHDDYVES 831

Query: 261  SSIEQKEETKGAEDKLNMIRAYRSQ 335
            +    +EET  ++  L ++R YR +
Sbjct: 832  NEETTREETPSSDKVLRIVRLYRDK 856


>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
           Mis17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 441

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 23/100 (23%), Positives = 46/100 (46%)
 Frame = +3

Query: 54  SSTMSEREDNVYKAKLAEQAERYDEMVEAMKNVASRNVSDNELTVEERNLLSVAYKNVIG 233
           SST S    N    ++  Q+E Y ++ +   + +  ++SD E  +E R    V  +N + 
Sbjct: 45  SSTRSSPASNQQNLEIVSQSEAYHKISDLDDSTSIFSISDQENILERRISEEVVRENSV- 103

Query: 234 ARRASWRIISSIEQKEETKGAEDKLNMIRAYRSQVEKELR 353
              +S   +SS     ET+ + + L     + S  +K+++
Sbjct: 104 ---SSIENVSSSAVARETQSSANILVKDNHFFSHKQKKIQ 140


>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 421 DSPVCELGMRYLSRTPRMSEQMSRSSFSTW 332
           DSP   +G R +S+  R  +   RSS S+W
Sbjct: 481 DSPTKVIGKRNVSKASRTGQGRKRSSRSSW 510


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +3

Query: 309 NMIRAYRSQVEKELRDICSDILGVLDK 389
           N +RA + +++K+L+D+  +   +LDK
Sbjct: 243 NQLRADKKKLKKDLKDLVEEFQPILDK 269


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = -3

Query: 376 PRMSEQMSRSSFSTWLRYALIMFNLSSAPFVSSFCSM 266
           P ++E  + +S S+W+  A ++ + +  P V  FC++
Sbjct: 121 PTIAEDFNDTSSSSWIGSAYVLASNAVLPAVGVFCNI 157


>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = -1

Query: 183 SAHCRTRCVMLHSSSPPPFRHSAQPAQLTLLYT--HYLPFPTL 61
           S+H   + +  H    P F  S    QLTLL +   YLP P +
Sbjct: 486 SSHREKKSIYQHKEYMPDFLSSRDEFQLTLLESTWQYLPDPNV 528


>SPBC18H10.03 |tif35||translation initiation factor
           eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 282

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 339 EKELRDICSDILGVLDKYLIPSSQTGESKVFYY 437
           E+ELRD+     G+   YL    +TG +K F +
Sbjct: 215 EEELRDLFRRFGGIQRVYLAKDKETGRAKGFAF 247


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = +3

Query: 84  VYKAKLAEQAE----RYDEMVEAMKNVASRNVSDNELTVEERNLLSVAYKNVIGARR 242
           +YK KL    E    R DE+V  MKN+  +N + +EL     +     ++N + + R
Sbjct: 202 IYKEKLRFSLESRKSRVDEIVNEMKNMCGKNPT-SELPTNYSDKTLTLWENELSSMR 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,365,255
Number of Sequences: 5004
Number of extensions: 43361
Number of successful extensions: 191
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)