Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5008
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    29   0.76 
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    27   3.1  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    26   5.3  
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    25   9.3  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    25   9.3  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    25   9.3  

>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 18/61 (29%), Positives = 24/61 (39%)
 Frame = -2

Query: 354 RRSDPARNLVDCVCGLVRSSSITTKGSTRTVTLAWLADPGPKSTESGSGESDKTCFGRRW 175
           +  DP  NL       +R  S        + T +W  +P P STE+    S K  F   W
Sbjct: 178 KTDDPMANLDIVAFNTIRILSAIPSPLPSSSTSSWADEPSPSSTET---SSIKRAFQESW 234

Query: 174 L 172
           L
Sbjct: 235 L 235


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 306 VRSSSITTKGSTRTVTLAWLADP 238
           V SS+IT +G  R+ TL W  DP
Sbjct: 197 VISSNITRQGIKRSRTLPWAVDP 219


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 370 RSRPTEKIRSGKKLSGLCLRVSSFVVD 290
           RS  T   +   +LS LC+R+SS VVD
Sbjct: 798 RSSITRVYKEFIRLSKLCMRISSTVVD 824


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 455 YFCREAVMRFGLKGGAAVVTILRPQNLHLK 544
           YF   ++M+FG   G+A +  L  + LH K
Sbjct: 406 YFVLYSIMQFGFSVGSAPLVSLATKQLHPK 435


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 97  LLKQRSIDGIYGCSYSIVEILTSCAKPPSPETRLVGFPGST 219
           L  QR  D     ++S  + +    +P SP + +VGF GST
Sbjct: 287 LTSQRDNDHQKDLNFSPYKSIPLNNRPYSPMSEIVGFSGST 327


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 85  FLIVLLKQRS-IDGIYGCSYSIVEILTSCAKPPSPE 189
           FL  +L  R  I  ++GC   IV ++T C   P+ E
Sbjct: 3   FLTKILPLRGRIFPMFGCLLLIVSLITGCIASPAAE 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,419,087
Number of Sequences: 5004
Number of extensions: 43652
Number of successful extensions: 98
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)