Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5008
         (646 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41277-5|AAA82476.2|  230|Caenorhabditis elegans Hypothetical pr...    31   0.92 
Z70683-4|CAC42282.1|  109|Caenorhabditis elegans Hypothetical pr...    28   4.9  
L14331-4|AAA28097.1|  352|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AF070472-1|AAC33275.1|  109|Caenorhabditis elegans insulin-like ...    28   4.9  

>U41277-5|AAA82476.2|  230|Caenorhabditis elegans Hypothetical
           protein C06E4.7 protein.
          Length = 230

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 524 PQNLHLKVAHLRCKCL-WAPVTT*HQVGCELV 616
           P+ ++L VA  +C C  W   +T   +GCELV
Sbjct: 23  PRTINLSVAERQCICASWEKASTQSDIGCELV 54


>Z70683-4|CAC42282.1|  109|Caenorhabditis elegans Hypothetical
           protein F13B12.5 protein.
          Length = 109

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = -3

Query: 494 PSSRNALLLHGRNRQGAVSSS**YKCCNE*FEFEYELTSCCS 369
           P++R+   +H + ++G +++    +CC +   F Y  T CC+
Sbjct: 68  PTTRDLFHIHHQQKRGGIAT----ECCEKRCSFAYLKTFCCN 105


>L14331-4|AAA28097.1|  352|Caenorhabditis elegans Hypothetical
           protein K12H4.3 protein.
          Length = 352

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 334 KLSGLCLRVSSFVVDYDEGFDE 269
           K+SG CLR S  V+ +D+ FD+
Sbjct: 156 KMSGNCLRASRPVLSFDDAFDK 177


>AF070472-1|AAC33275.1|  109|Caenorhabditis elegans insulin-like
           peptide protein.
          Length = 109

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = -3

Query: 494 PSSRNALLLHGRNRQGAVSSS**YKCCNE*FEFEYELTSCCS 369
           P++R+   +H + ++G +++    +CC +   F Y  T CC+
Sbjct: 68  PTTRDLFHIHHQQKRGGIAT----ECCEKRCSFAYLKTFCCN 105


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,704,763
Number of Sequences: 27780
Number of extensions: 259793
Number of successful extensions: 580
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)