Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5008
         (646 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   3.3  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   4.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.7  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -1

Query: 298 VVDYDEGFDEDGD 260
           +VDY++ FDE GD
Sbjct: 259 MVDYEDEFDEFGD 271


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 92  IKKVVFFSVPMLIALKGY 39
           +  ++FF +PMLI L  Y
Sbjct: 215 LSTIIFFLIPMLIILVVY 232


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -2

Query: 297 SSITTKGSTRTVTLAWLADPGPKSTESGSGESDKT 193
           +++TT G+T T+  A     GP +  +    S+ T
Sbjct: 217 ATVTTTGATTTLPAASATGTGPATPSAVVATSNAT 251


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,901
Number of Sequences: 438
Number of extensions: 3005
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)