Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5006
         (603 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0206 + 41990251-41992032,41992131-41992361                       28   5.0  
01_06_1724 - 39452858-39454309                                         28   5.0  
06_03_1127 - 27807784-27807963,27808362-27808460,27809076-278091...    28   6.5  

>01_07_0206 + 41990251-41992032,41992131-41992361
          Length = 670

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 45  YSSRNKSLIAKKLQSAALALGQWFRKWR 128
           Y + +K+ ++K+ + + L LGQW   WR
Sbjct: 272 YVNMDKTWLSKQAEMSTLQLGQWKPSWR 299


>01_06_1724 - 39452858-39454309
          Length = 483

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 269 QVPGRYPGCIDDIPPAYKISP*PCRVY 349
           QVPG++P CI     AY++ P PC  Y
Sbjct: 333 QVPGQHPPCI-----AYQMPPPPCLAY 354


>06_03_1127 -
           27807784-27807963,27808362-27808460,27809076-27809165,
           27809272-27809404,27809539-27809624,27810028-27810099,
           27810329-27810415,27810485-27810616,27810718-27810789,
           27810957-27811037,27811871-27811963,27812298-27812465
          Length = 430

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
 Frame = +2

Query: 488 RHPPIPTIPLLQ-----VNCRGSPVREERWTYTTTWASNQLG 598
           RHPP P+ P  Q     V CRG+     RW +   +   Q G
Sbjct: 41  RHPPPPSPPHYQIRSKVVGCRGATFVSSRWLHDAQYQVRQDG 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,375,577
Number of Sequences: 37544
Number of extensions: 430987
Number of successful extensions: 1255
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1255
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)