Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5006
         (603 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X79683-1|CAA56130.1| 1798|Homo sapiens beta2/S laminin chain pro...    32   1.8  
U58837-1|AAB63387.1| 1251|Homo sapiens cGMP-gated cation channel...    30   5.4  
L15297-1|AAA65619.1|  623|Homo sapiens cyclic nucleotide-gated c...    30   5.4  
L15296-1|AAA65620.1|  909|Homo sapiens cyclic nucleotide-gated c...    30   5.4  
AY677118-1|AAT78421.1|  366|Homo sapiens Galphai2 protein protein.     30   5.4  
Z68155-1|CAA92279.1| 1798|Homo sapiens laminin beta 2 chain prot...    30   7.2  
S77512-1|AAB34682.2| 1798|Homo sapiens laminin beta 2 chain prot...    30   7.2  
AY957526-1|AAX57550.1|  128|Homo sapiens anti-oxLDL immunoglobul...    30   7.2  

>X79683-1|CAA56130.1| 1798|Homo sapiens beta2/S laminin chain
           protein.
          Length = 1798

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 416 KCHLVPKGHFTPLTDHGVESTENKRGTVTD 327
           +C  V  G+F P  DH +   EN RG V D
Sbjct: 551 RCEQVQPGYFRPFLDHLIWEAENTRGQVLD 580


>U58837-1|AAB63387.1| 1251|Homo sapiens cGMP-gated cation channel beta
            subunit protein.
          Length = 1251

 Score = 30.3 bits (65), Expect = 5.4
 Identities = 16/38 (42%), Positives = 17/38 (44%)
 Frame = -2

Query: 560  TVPHEPGSPGS*PAKAGL*GLEGVYVCPGRISEHHTRV 447
            T P  PGSP S P  A L   EG    P    EH  R+
Sbjct: 1188 TPPEPPGSPPSSPPPASLGSCEGEEEGPAEPEEHSVRI 1225


>L15297-1|AAA65619.1|  623|Homo sapiens cyclic nucleotide-gated
           cation channel protein.
          Length = 623

 Score = 30.3 bits (65), Expect = 5.4
 Identities = 16/38 (42%), Positives = 17/38 (44%)
 Frame = -2

Query: 560 TVPHEPGSPGS*PAKAGL*GLEGVYVCPGRISEHHTRV 447
           T P  PGSP S P  A L   EG    P    EH  R+
Sbjct: 560 TPPEPPGSPPSSPPPASLGSCEGEEEGPAEPEEHSVRI 597


>L15296-1|AAA65620.1|  909|Homo sapiens cyclic nucleotide-gated
           cation channel protein.
          Length = 909

 Score = 30.3 bits (65), Expect = 5.4
 Identities = 16/38 (42%), Positives = 17/38 (44%)
 Frame = -2

Query: 560 TVPHEPGSPGS*PAKAGL*GLEGVYVCPGRISEHHTRV 447
           T P  PGSP S P  A L   EG    P    EH  R+
Sbjct: 846 TPPEPPGSPPSSPPPASLGSCEGEEEGPAEPEEHSVRI 883


>AY677118-1|AAT78421.1|  366|Homo sapiens Galphai2 protein protein.
          Length = 366

 Score = 30.3 bits (65), Expect = 5.4
 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +2

Query: 431 KARHDLRECGARLCGPDTHRHP-PIPTIPL 517
           K+R   RE   +L GPD H HP P P  PL
Sbjct: 331 KSRKLFRETYLKLSGPDQHPHPSPAPAPPL 360


>Z68155-1|CAA92279.1| 1798|Homo sapiens laminin beta 2 chain
           protein.
          Length = 1798

 Score = 29.9 bits (64), Expect = 7.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 416 KCHLVPKGHFTPLTDHGVESTENKRGTVTD 327
           +C  V  G+F P  DH +   E+ RG V D
Sbjct: 551 RCEQVQPGYFRPFLDHLIWEAEDTRGQVLD 580


>S77512-1|AAB34682.2| 1798|Homo sapiens laminin beta 2 chain
           protein.
          Length = 1798

 Score = 29.9 bits (64), Expect = 7.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 416 KCHLVPKGHFTPLTDHGVESTENKRGTVTD 327
           +C  V  G+F P  DH +   E+ RG V D
Sbjct: 551 RCEQVQPGYFRPFLDHLIWEAEDTRGQVLD 580


>AY957526-1|AAX57550.1|  128|Homo sapiens anti-oxLDL immunoglobulin
           heavy chain variable region protein.
          Length = 128

 Score = 29.9 bits (64), Expect = 7.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 18  LFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKW 125
           L +DDT VYY +R++ +I   +    L  G WF  W
Sbjct: 86  LRSDDTAVYYCARSRPII---MGRGVLPPGHWFDLW 118


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,142,745
Number of Sequences: 237096
Number of extensions: 2577729
Number of successful extensions: 10621
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10621
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6354183230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)