Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5006
         (603 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    47   9e-06
AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical ...    40   0.002
AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    38   0.006
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    33   0.21 
U58755-13|AAB00702.1|  348|Caenorhabditis elegans Collagen prote...    32   0.27 
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    31   0.63 
Z46791-2|CAA86756.1|  283|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AC091267-3|AAK31563.3|  339|Caenorhabditis elegans Hypothetical ...    28   5.9  
AC024791-24|AAF60656.1|  627|Caenorhabditis elegans Hypothetical...    28   5.9  
Z81052-6|CAB02874.1|  336|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 47.2 bits (107), Expect = 9e-06
 Identities = 44/168 (26%), Positives = 74/168 (44%)
 Frame = +3

Query: 21  FADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVLFQXXXXXXXXXX 200
           FADDT +Y +S  K+     LQSA  A+  W +  ++ +N +K+  V             
Sbjct: 108 FADDTKLY-ASTPKTESENNLQSALDAVVDWTKGSKLTLNQSKTVHVTV----------- 155

Query: 201 XXXXNLTPPITLFRQPIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICK 380
                +     L   PI      + LG  +   + F  H +   + A F L  ++    K
Sbjct: 156 -GKRRIDFKYHLDGYPIERKAITRDLGFLISEKLDFSDHWRKCINLAKFQLANMFN---K 211

Query: 381 RSKMSLRNKVTLYKTCIRPVMTYASVVLAYAARTHIDTLQSLQSRFCR 524
            S  + +  + LYKT IRP + Y +VV +   ++   T++S+Q+ F R
Sbjct: 212 YSTSNKKLMILLYKTFIRPRLEYGTVVSSPTKKSDEKTIESVQNAFTR 259


>AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical
           protein K09H9.4 protein.
          Length = 328

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 40/166 (24%), Positives = 69/166 (41%)
 Frame = +3

Query: 27  DDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVLFQXXXXXXXXXXXX 206
           DDT +Y S+  K+     LQ+A  A+  W R  ++ ++ +K+  V               
Sbjct: 80  DDTKLYVSTP-KAETENNLQAALDAVVDWTRGAKLTLSQSKTVHVTVGRCRKDFKYH--- 135

Query: 207 XXNLTPPITLFRQPIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRS 386
                    L   PI      + LG  +   + F  H K   + A F L  ++      +
Sbjct: 136 ---------LDGYPIERKTITRDLGFLISEKLDFSEHWKKSINLAKFQLANIFNQYSTSN 186

Query: 387 KMSLRNKVTLYKTCIRPVMTYASVVLAYAARTHIDTLQSLQSRFCR 524
           K  +   + LYKT IRP + Y +VV +   ++    ++S+Q+ F R
Sbjct: 187 KKLM---ILLYKTFIRPRLEYGTVVSSPTKKSDEKAIESVQNAFTR 229


>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 23/84 (27%), Positives = 40/84 (47%)
 Frame = +3

Query: 246 PIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKT 425
           PI  +   + LG+  D+ +TF+PHIK +    +  L R   ++     +       L+KT
Sbjct: 188 PISPSNIARDLGILTDSKLTFKPHIKKI---VSLALLRCKQLLKSFKSLCPEFYCNLFKT 244

Query: 426 CIRPVMTYASVVLAYAARTHIDTL 497
            I P++ Y S V +    + + TL
Sbjct: 245 YILPLIEYGSAVYSPKPSSSLSTL 268


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
            protein F21E9.1 protein.
          Length = 1170

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 23/74 (31%), Positives = 34/74 (45%)
 Frame = +3

Query: 246  PIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKT 425
            PI  +  V+ LG+  D  + F  HI  V   +   + R   ++   S  S +    LYKT
Sbjct: 969  PITPSSTVRDLGLITDCKLKFEHHIVKV---SCLAMLRSKQILKAFSSNSPKFYAHLYKT 1025

Query: 426  CIRPVMTYASVVLA 467
             + P+M Y S V A
Sbjct: 1026 YVAPIMNYCSEVYA 1039


>U58755-13|AAB00702.1|  348|Caenorhabditis elegans Collagen protein
           113 protein.
          Length = 348

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 18/46 (39%), Positives = 21/46 (45%)
 Frame = -2

Query: 596 PIDSRPRSSCRSTVPHEPGSPGS*PAKAGL*GLEGVYVCPGRISEH 459
           P+   P   CR   P+ P  P   P + G  G EG    PGRI EH
Sbjct: 140 PVTIDPTKGCR-VCPNGPRGPTGPPGETGPSGPEGPPGNPGRIGEH 184


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 24/105 (22%), Positives = 42/105 (40%)
 Frame = +3

Query: 6   THLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVLFQXXXXX 185
           T L  +ADD ++    +     A+K+Q     + ++ ++  + I+  KST  +F      
Sbjct: 557 TMLISYADDMSIIARDKKIEKAAEKVQLHIDEIAKYLKERGMSISAEKSTVTVFSCDPKE 616

Query: 186 XXXXXXXXXNLTPPITLFRQPIPWARKVKYLGVTLDASMTFRPHI 320
                       P I     PIP     K LG+TL+     + H+
Sbjct: 617 H--------KTKPDIYWMDDPIPVINAPKLLGITLNTMTGTKDHV 653


>Z46791-2|CAA86756.1|  283|Caenorhabditis elegans Hypothetical
           protein C09G5.3 protein.
          Length = 283

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 19/74 (25%), Positives = 30/74 (40%)
 Frame = -2

Query: 587 SRPRSSCRSTVPHEPGSPGS*PAKAGL*GLEGVYVCPGRISEHHTRVSHDGPYASFVKCH 408
           S  + +C     + PG P   P + G  G++GV   PG   E+           + +KC 
Sbjct: 78  SGDKCNCSEEPSNCPGGPPGPPGEKGNDGVDGVDGIPGFPGENGGAALDQPADGTCIKCP 137

Query: 407 LVPKGHFTPLTDHG 366
             P+G   P  + G
Sbjct: 138 PGPRGPPGPQGEEG 151


>AC091267-3|AAK31563.3|  339|Caenorhabditis elegans Hypothetical
           protein Y37B11A.3 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +2

Query: 464 RLCGPDTHRHPPIPTIPLLQVNCRGSPVREERWTY 568
           R CG D++ H       LL   C GSPV  ER TY
Sbjct: 294 RSCGLDSNSHR------LLSPRCLGSPVASERATY 322


>AC024791-24|AAF60656.1|  627|Caenorhabditis elegans Hypothetical
           protein Y47G6A.4 protein.
          Length = 627

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +2

Query: 65  PNREEASERSPSPRTVVPKMAHRHQPSEKYCGAISEGKLHTDF-LPD*EEESHTP 226
           PN ++ S   P+PR + P+ A R  PS+    A SE K  + F   D  E+  TP
Sbjct: 540 PNVQQESVVVPAPRRLSPQRAPR--PSQNSPNAYSERKSFSAFPSEDPSEDYETP 592


>Z81052-6|CAB02874.1|  336|Caenorhabditis elegans Hypothetical
           protein D2023.7 protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 581 PRSSCRSTVPHEPGSPGS*PAKAGL*GLEG 492
           P + C +  P +PGSPG    K GL G+ G
Sbjct: 146 PFNGCITCAPGKPGSPGE-RGKPGLRGMRG 174


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,730,744
Number of Sequences: 27780
Number of extensions: 336859
Number of successful extensions: 899
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)