Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5005
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    25   9.0  
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch...    25   9.0  
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch...    25   9.0  

>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 362 TYSIEMPATSSSDLSVRHFRMSKMPF 439
           T SI++PA  S D   + FR S +PF
Sbjct: 869 TGSIKIPAKRSFDTIDKDFRSSNIPF 894


>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +3

Query: 285 AYSKKCSCNREKATVFCRSCGFYCNGRIRL 374
           +Y ++      K    C++CGF C+ R  L
Sbjct: 412 SYCREIIWGLSKRGCVCKNCGFKCHARCEL 441


>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 703

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/44 (22%), Positives = 23/44 (52%)
 Frame = -3

Query: 432 ILDILKCLTERSLEDVAGISIEYVRCNRNHKNDKTQLPSLCYMN 301
           +L+I+ C+ +  L  +      ++   +++KN  + +P LC  N
Sbjct: 619 LLEIVDCINDNGLAQI------FLALTQDYKNSSSGIPDLCLWN 656


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,462,111
Number of Sequences: 5004
Number of extensions: 49140
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)