Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5005
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_02_0036 - 9033411-9033746,9033961-9034032,9034122-9034222,903...    29   2.3  
11_01_0134 - 1127794-1127889,1128005-1128196,1128336-1128425,112...    28   7.0  
09_02_0250 + 6266818-6267029,6267230-6267287,6267999-6268118,627...    28   7.0  
07_01_0464 - 3504264-3504475,3504842-3505031,3505310-3505408,350...    28   7.0  
08_01_0758 - 7193287-7193871,7193965-7194421,7194437-7194655,719...    27   9.2  
08_01_0757 - 7164380-7164490,7164585-7165041,7165057-7165275,716...    27   9.2  
05_05_0010 - 21496089-21496487                                         27   9.2  

>04_02_0036 -
           9033411-9033746,9033961-9034032,9034122-9034222,
           9034309-9034530,9034832-9034913,9035029-9035214,
           9035311-9035445,9035543-9035641
          Length = 410

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 390 PRVTFLLDISECPKCHSSVFLDEYK 464
           PR T+++ + +CP  H  + LDE K
Sbjct: 219 PRTTYIIALKDCPGTHEFLLLDEGK 243


>11_01_0134 -
           1127794-1127889,1128005-1128196,1128336-1128425,
           1128640-1128693
          Length = 143

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 174 ICNLKMEKTTPIVAAAAGSVRKKMANRIGRGVPEVTDAYSKKCS 305
           +C+ K      ++A + G+V +   NR+  G+   T  YSK+ S
Sbjct: 94  MCDCKPSPYAVLLANSTGTVARSADNRVREGMAGETAVYSKQYS 137


>09_02_0250 +
           6266818-6267029,6267230-6267287,6267999-6268118,
           6272359-6272511,6273381-6273586,6274280-6274733,
           6276573-6276610,6276923-6277046,6277184-6277246,
           6277350-6277412,6277526-6278152,6278267-6278294,
           6278373-6278413,6278689-6278851,6278987-6279039,
           6279217-6279262,6279373-6279444,6279578-6279741,
           6279968-6280099,6280249-6280565,6280721-6280892,
           6281009-6281107,6281275-6281349,6281446-6281504,
           6281647-6281836,6281982-6282020
          Length = 1255

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 374 QSNTSVAIETTRTTKHSCLLSVT*TFFRISVSYF 273
           + N++V +E  +  K +CL     +F R S  YF
Sbjct: 486 KKNSNVLLENQKMKKQTCLTKANSSFSRFSAKYF 519


>07_01_0464 - 3504264-3504475,3504842-3505031,3505310-3505408,
            3505561-3505653,3505926-3506891,3507267-3507485,
            3508038-3508247,3508371-3508630,3508956-3510737,
            3510796-3511009
          Length = 1414

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -2

Query: 421  SEMSNRKVTRGCCWHFNRIRPLQ*KPQERQNTVAFSLL 308
            SE S   V R C    +R++PL+ + QE+Q TV++  L
Sbjct: 1177 SESSCEAVHRACNILVDRLKPLKEQLQEKQGTVSWDEL 1214


>08_01_0758 -
           7193287-7193871,7193965-7194421,7194437-7194655,
           7194881-7195419
          Length = 599

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +2

Query: 311 QREGNCVLSFLWFLLQRTYSIEMPAT---SSSDLSVRHFRMSKMPFICIP 451
           +R+GNC LS+   LL R   +E+ +T    S + S +   + K+    +P
Sbjct: 300 ERKGNCYLSWSHLLLARVMVVELSSTGQFGSVNFSFKGKHVDKLRLFVMP 349


>08_01_0757 -
           7164380-7164490,7164585-7165041,7165057-7165275,
           7165501-7165757
          Length = 347

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +2

Query: 311 QREGNCVLSFLWFLLQRTYSIEMPAT---SSSDLSVRHFRMSKMPFICIP 451
           +R+GNC LS+   LL R   +E+ +T    S + S +   + K+    +P
Sbjct: 206 ERKGNCYLSWSHLLLARVMVVELSSTGQFGSVNFSFKGKHVDKLRLFVMP 255


>05_05_0010 - 21496089-21496487
          Length = 132

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +3

Query: 420 ECPKCHSSVFLD 455
           +CPKCHS+V LD
Sbjct: 97  KCPKCHSTVLLD 108


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,642,873
Number of Sequences: 37544
Number of extensions: 275183
Number of successful extensions: 609
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)