Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5001
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    29   0.94 
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    26   5.0  
SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit T...    26   6.6  

>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +1

Query: 502 ETNKYCLVLKAESKLDYYCFSYAPERS*AFAKMFVYILRNTKINS 636
           +T  Y L    ++KL Y  FS    +  AFA + ++ L N KINS
Sbjct: 202 DTIDYILKTSGQTKLTYIGFSQGTAQ--AFASLSIHPLLNDKINS 244


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +2

Query: 551 IIVSHTPRNDPKRLQKCLYTYYVIPKLTLRQNCKF 655
           +I  HT   +P+ L+  L++  +    T++QNC +
Sbjct: 698 VIADHTLSENPEALKALLFSKDISNLETIQQNCSY 732


>SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit Tfb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 481 NFELKFHETNKYCLVLKAESKLDYYCFSYAPER 579
           N  L FH  N+  ++     K++Y   S APE+
Sbjct: 58  NAHLAFHHDNRVAVLASHSDKVEYLYPSIAPEQ 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,759,684
Number of Sequences: 5004
Number of extensions: 53535
Number of successful extensions: 122
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)