Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5001
         (749 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68114-9|CAA92156.1|  320|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U00065-2|AAL27237.1|  672|Caenorhabditis elegans Prion-like-(q/n...    28   8.1  

>Z68114-9|CAA92156.1|  320|Caenorhabditis elegans Hypothetical
           protein F17A2.12 protein.
          Length = 320

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = -3

Query: 480 IFILNCNLYTRAATV----ARERRLGSCYPVTVQSYGYIIYIRQNKNYTIY 340
           +F+LN +L+     V    ++ R + +  P+ ++SYG + Y+     YT+Y
Sbjct: 45  VFLLNTSLFQIILVVVSCSSQFRMITTAIPIELRSYGLLRYLEAWLGYTMY 95


>U00065-2|AAL27237.1|  672|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 25
           protein.
          Length = 672

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 10  RSSPPALLTLFYFYLIRVVCSLMSRGTPAATPL 108
           R  PP ++ LF+  L   V S++S+  P  TPL
Sbjct: 25  RVPPPIMICLFFLLLQIFVISVVSQCPPGLTPL 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,563,053
Number of Sequences: 27780
Number of extensions: 307670
Number of successful extensions: 640
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)