Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4999
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe...    28   1.3  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    28   1.7  
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces...    27   2.2  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    27   3.8  
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch...    27   3.8  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    26   5.0  
SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha...    26   6.7  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    25   8.8  

>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 513

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 572 WTTAISPNTSRTQPYHRFPQIPQVPGSNTISSHPTVSPS 688
           W  A  PNT R+ PY R  +I  V       S P++ P+
Sbjct: 358 WPYAGLPNTGRSNPYARISEIFNVNHFVITQSRPSLFPT 396


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 24/82 (29%), Positives = 37/82 (45%)
 Frame = +2

Query: 446 SRFYTTKPTTAKSN*IEFPSPFPVAASEFIPKFS*FPSDSPGWTTAISPNTSRTQPYHRF 625
           SR   T+PT A    +  PS  PV +   +P         PG T++I+  T+ + P    
Sbjct: 413 SRQEKTQPTNASPAPLVTPS-LPVPSIPAVPGMEAMAMP-PGVTSSIAVPTTSSMPLQGM 470

Query: 626 PQIPQVPGSNTISSHPTVSPST 691
           P +   PG   +S+  T +P T
Sbjct: 471 PTMFGAPG---VSAPGTEAPGT 489


>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 127 HKRKPSAFQRHNILILHQLRTIPMDLFHSSRTKCHTLVVFQQFNRVS 267
           H  + S +  HN   LH L+T   +L HS+  +  T+  F   N  S
Sbjct: 100 HVNQTSPYTHHNAEPLHDLQTFSSNLNHSNNRR-QTICNFNMANDAS 145


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +2

Query: 587 SPNTSRTQPYHRFPQIPQVPGSNTISSHPTVSPSTRASPVFFKYHRAPMFPQSP 748
           S +    QP    P +PQ P +  +   P+V     A+PV  +   AP  P +P
Sbjct: 499 SASQKAAQPSVITPSVPQPPAAPVVPEAPSVH-QPPAAPVAPEVPSAPQRPAAP 551


>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 619 SFPANSSSTRVKYHILPSHSFPKHQGFPSFLQIP 720
           S   + +S RV + I+P  + P  Q FPS    P
Sbjct: 362 SLHPSPTSLRVAHPIIPQRASPASQSFPSLQDTP 395


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = +2

Query: 575 TTAISPNTSRTQPYHRFPQIPQVPGSNTISSHPTVSPSTRASPV---FFKYHRAPMFPQ- 742
           + A S N+SRT+ Y            + ISS P+ S   R +P    F + H++  FP  
Sbjct: 556 SVASSRNSSRTRSYSNVSSASSNSLISIISSKPSSSTVQRQTPFHSPFERLHKSFHFPSG 615

Query: 743 SPF 751
            PF
Sbjct: 616 EPF 618


>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
           Caf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
 Frame = +2

Query: 614 YHRFPQIPQVPGSNTISSHPTVSPSTRASP-VFFKYHRAPMFPQSPFTF 757
           +H     PQ+   +   +HP+ +PS    P        AP F  S F F
Sbjct: 279 WHNNSSTPQIQFRDLPGAHPSPTPSNAGIPTTLTNTSSAPNFANSTFRF 327


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/40 (35%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
 Frame = +3

Query: 69  PGAPLSLSAAVLNHHTVIPAQTKAFGFST-TQYINSPPVA 185
           P + ++LS  V N+H+ + +QTK+  F+T + + N+ PV+
Sbjct: 324 PHSQITLSN-VKNNHSHVGSQTKSHSFATPSVFDNNKPVS 362


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,175,861
Number of Sequences: 5004
Number of extensions: 70348
Number of successful extensions: 252
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)