Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4996
         (719 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1267 + 25728324-25728407,25728436-25728502,25728753-257288...    29   4.9  
04_04_0466 + 25433678-25434007,25434118-25434176,25434345-254344...    29   4.9  

>08_02_1267 +
           25728324-25728407,25728436-25728502,25728753-25728828,
           25729388-25729450,25729640-25729896,25731299-25731440,
           25731524-25732017,25732398-25732536,25733805-25733876,
           25733960-25734040,25734677-25734843,25734942-25735147,
           25735301-25735427,25735515-25735639
          Length = 699

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 563 KIYFGKNLTHLLIMYCLLFSFMKALVFVGRNRFY 664
           KIY G N+TH L+    L SF +  V  G NR++
Sbjct: 192 KIYPGSNMTHALV----LLSFFRNTVKFGPNRYH 221


>04_04_0466 +
           25433678-25434007,25434118-25434176,25434345-25434426,
           25435024-25435122,25435750-25435831,25436759-25436823,
           25437241-25438308,25438369-25438446,25438550-25438596,
           25438734-25438779,25438871-25438950,25439050-25439166,
           25439842-25439923,25440156-25440281,25440415-25440489,
           25440743-25440868,25441542-25441646
          Length = 888

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +3

Query: 450 NIRHLNQQFYNAFTSILNLTIKFNTNYFLYELQLL 554
           N++  ++ F+ AFTS+LN  +  N  + L E++ L
Sbjct: 368 NMKETDEYFWKAFTSVLNQNVLQNFGFSLPEVKQL 402


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,605,413
Number of Sequences: 37544
Number of extensions: 317161
Number of successful extensions: 616
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)