Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4995
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha...    27   2.9  
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     26   6.6  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           26   6.6  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    25   8.8  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    25   8.8  

>SPBC32H8.09 |||WD repeat protein, human WDR8
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 751 SLVFCTHLSKYFLSYTCPYYPVLTKAWAL 665
           S+ FCT LS++  S    +Y +  KAW L
Sbjct: 153 SMQFCTILSRFNGSDCLQFYQISKKAWIL 181


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = -1

Query: 192 GFTKKKHCLKLKLFSRLPISTISRLLNARYLKYRCL---SYPCHENPACRLRDKKIHLKI 22
           G+ + + C  +  FS +  S  S+LLNA      CL     P     A  L+    HL++
Sbjct: 479 GYLRSRACEMINRFSEIDWSDKSQLLNAYQAVLNCLQDNDLPVRIQAALALQPLMRHLEV 538


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +2

Query: 62  GFSWHGYDRQRYFKYLAFRSRLIVEIGRRENSFNFKQCFF-FVN-PLFLYNV*NLIPLK 232
           GF+  G  +Q +F+Y     R  + +     ++NF + F   VN P   ++V   IPL+
Sbjct: 405 GFNLLGKMKQSFFEYFQASCRHTLNLLDENANYNFSKIFITHVNVPALEFDVSGCIPLE 463


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = -3

Query: 142 AYFHYKSAPERKVFEISLPIVSVPR---KPCLPT 50
           AY    ++PE KVF+  +P+   P+   KP  PT
Sbjct: 350 AYVAKSTSPELKVFDTVMPVALSPKPAQKPPSPT 383


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = +2

Query: 86  RQRYFKYLAFRSRLIVEIGRRENSFNFKQCF 178
           RQ   + LA   ++++ + +   +FN + CF
Sbjct: 486 RQEQMRLLAVLEQVLINVAKNTPAFNLQSCF 516


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,817,301
Number of Sequences: 5004
Number of extensions: 54257
Number of successful extensions: 136
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)