Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4995
         (753 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              23   3.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   7.1  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   9.4  

>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 149 ENSFNFKQCFFFVNPL 196
           E SF F +C + VNP+
Sbjct: 123 EKSFMFMKCMYEVNPI 138


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 2   NNCLQCLIFRCIFLSRSRQA 61
           N C  C + +CI +  SR A
Sbjct: 118 NRCQYCRLKKCIAVGMSRDA 137


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 113 FRSRLIVEIGRRENSFNFKQCFFFVNPL 196
           FR  L++    +++SF  +  FF+ +PL
Sbjct: 331 FRYGLLIYDFFKDSSFRIQHHFFYPDPL 358


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,804
Number of Sequences: 438
Number of extensions: 3757
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)