Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4993
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    29   0.49 
SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ...    27   2.0  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   3.5  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    26   4.6  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    25   6.1  

>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 29.1 bits (62), Expect = 0.49
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = -1

Query: 479 IVKRKFAGAPVASLLVDRHVVIAVDHSVAVAVLAKSSHVVLNGLP---GAVRVYSAARVG 309
           I +R  AG  + SLL   + VI V+H ++V         VL G+P   G V +  + R G
Sbjct: 252 IKQRLKAGRVIRSLLATTNYVIVVEHDLSVLDYLSDFVCVLYGVPSMYGVVTLPYSVREG 311

Query: 308 I 306
           I
Sbjct: 312 I 312


>SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 251

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 405 VNCYDYMAIHKKGGYGCTGELP 470
           +N  DY+ ++  GGYGC+ + P
Sbjct: 105 LNPSDYVIVYIPGGYGCSFDFP 126


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 217 PSHC-RPCLHPKIAWQMQPRHTSVTGGSSETSAKQ 116
           PSH  R  LHP ++ Q QP   S + G ++ + +Q
Sbjct: 54  PSHLPRSTLHPLLSQQQQPAQQSPSLGPAQQNIQQ 88


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -3

Query: 156 PPSQGGVPKHRRNNSGNQQQRTKPDHSRSHCVENTQT 46
           P  Q  V  H R  S   +Q T+  H+R   + + QT
Sbjct: 665 PSQQSTVSNHHRKESIPSKQPTEGQHARQESLPSQQT 701



 Score = 25.4 bits (53), Expect = 6.1
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = -3

Query: 225 TSHPRTADLACIQR*PGKCSRDT--PPSQGGVPKHRRNNSGNQQQRTKPDHSRSHCVENT 52
           ++H R   +   Q   G+ +R    P  Q    KH R  S   +Q T+  H+R   + + 
Sbjct: 672 SNHHRKESIPSKQPTEGQHARQESLPSQQTTETKHLRKESTPSKQPTEGQHTRQESLPSQ 731

Query: 51  QT 46
           QT
Sbjct: 732 QT 733


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 98  CCWLPELFRRCFGTPPC 148
           CCWLP+      G+P C
Sbjct: 302 CCWLPDGLSFITGSPDC 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,361,669
Number of Sequences: 5004
Number of extensions: 47854
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)