Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4993
(578 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0420 + 3320182-3320454,3320795-3321109 31 0.50
04_04_0351 + 24615858-24616448 30 1.5
09_02_0317 + 7186148-7186243,7186406-7186572,7186766-7186878,718... 29 2.7
01_01_0235 - 1964981-1964997,1965545-1966325 29 2.7
09_02_0124 - 4546722-4547107,4547677-4547854,4548027-4548215,454... 28 4.7
11_06_0154 + 20707811-20708210,20709252-20709523 28 6.2
10_05_0011 - 7822847-7822880,7823653-7823754,7823859-7824106,782... 28 6.2
09_04_0444 - 17649685-17650524 28 6.2
09_02_0429 + 9306862-9306970,9307834-9307942,9308538-9308616,930... 28 6.2
02_02_0464 - 10552347-10552466,10552683-10552928,10553866-105541... 28 6.2
01_05_0557 + 23243507-23243855,23243952-23244331,23244866-232449... 28 6.2
06_02_0096 - 11683368-11684581,11684705-11684773,11685356-116854... 27 8.2
02_05_1018 - 33530834-33530926,33531036-33531098,33531193-335312... 27 8.2
>12_01_0420 + 3320182-3320454,3320795-3321109
Length = 195
Score = 31.5 bits (68), Expect = 0.50
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 95 RCCWLPELFRRCFGTPPCDG 154
+CCWLP L PPCDG
Sbjct: 3 KCCWLPWLIIILLPLPPCDG 22
>04_04_0351 + 24615858-24616448
Length = 196
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +3
Query: 345 GQTVQNYMRRFGQ-DCNGDGVVNCYDYMAIHKKGGYGCTG 461
G+T + R GQ D +GDG V+ ++++ + + GG+ G
Sbjct: 157 GRTAEECRRMIGQVDRDGDGRVDFHEFLQMMRGGGFAALG 196
>09_02_0317 +
7186148-7186243,7186406-7186572,7186766-7186878,
7187059-7187133,7187215-7187328,7187545-7187612,
7187690-7187773,7187966-7188019,7188104-7188184,
7188279-7188372,7188501-7188574,7188656-7188766,
7188976-7189032,7189119-7189223,7189584-7189687,
7190021-7190186,7190279-7190416
Length = 566
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 315 SSCTVDPYCAGQTVQNYMRRFGQ 383
S+ T+DP CA VQ + FGQ
Sbjct: 43 STTTIDPTCANMVVQEFPNTFGQ 65
>01_01_0235 - 1964981-1964997,1965545-1966325
Length = 265
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +3
Query: 150 TEVCLGCICQAIFGCKQG-LQCEGETCGLXRITWGYWADAGKPTINGLLPDAP-DAYSSC 323
T +CL + + C + +CE TCG + + +W G P N +P A +SC
Sbjct: 4 TLLCLPLLASLLLLCHRARAECEPATCGNLTVRYPFW--LGGPNFNQSNQSSPSSALASC 61
>09_02_0124 -
4546722-4547107,4547677-4547854,4548027-4548215,
4548602-4548712,4549024-4549071,4549825-4549966,
4550349-4550695
Length = 466
Score = 28.3 bits (60), Expect = 4.7
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -2
Query: 238 RKRPHVSPSHCRPCLHPKIAWQ 173
R + H PS C+ LHP++ W+
Sbjct: 428 RGKSHRLPSKCKRRLHPRVVWE 449
>11_06_0154 + 20707811-20708210,20709252-20709523
Length = 223
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 403 WSTAMTTWRSTRREATGAPANFLLTM*NVFNQCINVFAQYPS 528
W +A T R R+EA+ + FL+T + CI+ F PS
Sbjct: 121 WKSATMTTRRDRQEASASNRQFLITPFRLL--CIHSFVLQPS 160
>10_05_0011 - 7822847-7822880,7823653-7823754,7823859-7824106,
7824195-7824240,7824368-7825984,7826673-7826797,
7826915-7829083
Length = 1446
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -2
Query: 202 PCLHPKIAWQMQPRHTSVTGGSSETSAKQLRQPTATHKT*SQPKPLRRKY 53
P HPK+ W M S G TS + P+ + S +P +RK+
Sbjct: 1234 PYNHPKVPWSMDTSSVSGHGLECSTSVRP-EMPSGLKVSSSVRRPKKRKF 1282
>09_04_0444 - 17649685-17650524
Length = 279
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/53 (24%), Positives = 21/53 (39%)
Frame = +3
Query: 285 GLLPDAPDAYSSCTVDPYCAGQTVQNYMRRFGQDCNGDGVVNCYDYMAIHKKG 443
G+ P P S P C G + ++ G V C ++MA ++G
Sbjct: 34 GMAPKPPGEIGSRVKGPSCGGGRYRECLKNHAVGIGGHAVDGCGEFMAAGEEG 86
>09_02_0429 +
9306862-9306970,9307834-9307942,9308538-9308616,
9308806-9308922,9309185-9309314,9311071-9311111
Length = 194
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 110 PELFRRCFGTPPCDGGVSRLHLPGYLWMQA 199
P+ FRR T G V R+H P +L+ QA
Sbjct: 158 PQKFRRNVQTAMSGGYVDRVHFPRFLYEQA 187
>02_02_0464 -
10552347-10552466,10552683-10552928,10553866-10554135,
10554231-10554413,10554493-10554688,10554775-10555079,
10555515-10555604,10555689-10555806,10555991-10556088,
10556187-10556272,10557622-10557736
Length = 608
Score = 27.9 bits (59), Expect = 6.2
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = -1
Query: 476 VKRKFAGAPVA-SLLVDRHVVIAVDHSVAVAVLAKSSHVVLNGLPGA---VRVYSAARVG 309
VK++ A V SLL ++ VI V+H +++ L G PGA V + S+ R G
Sbjct: 253 VKQRLKAAQVIRSLLQPKNYVIVVEHDLSILDYLSDYICCLYGTPGAYGVVTLPSSVREG 312
Query: 308 I 306
I
Sbjct: 313 I 313
>01_05_0557 +
23243507-23243855,23243952-23244331,23244866-23244931,
23245023-23245136,23245226-23245342,23245444-23245570,
23245660-23246486
Length = 659
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/29 (51%), Positives = 24/29 (82%), Gaps = 1/29 (3%)
Frame = +1
Query: 64 AMASAVIRFC-ALLLVAGVVSPMFRNSPL 147
AM++AV+ C AL+LVA ++P+FR++PL
Sbjct: 401 AMSNAVMSVCMALVLVA--LAPLFRHTPL 427
>06_02_0096 -
11683368-11684581,11684705-11684773,11685356-11685412,
11685553-11685609,11685758-11685817,11686770-11686893
Length = 526
Score = 27.5 bits (58), Expect = 8.2
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = -1
Query: 509 TLMHWLNTFYIVKRKFAG-APVASLLVDRHVVIAVDHSVAVAVLAKSSHVVLNGLPGAVR 333
T+ L YI R+ G + + DR H A+A L+ V L+ AVR
Sbjct: 243 TMNDILLPLYITAREHGGRVQLLAANYDRRWTAKYQH--ALAALSMYPVVDLDA-DAAVR 299
Query: 332 VYSAARVGIRSVR*KTIDSGFSG 264
+ +ARVG+ S R ID+ +G
Sbjct: 300 CFPSARVGVESHRVLGIDTPLTG 322
>02_05_1018 -
33530834-33530926,33531036-33531098,33531193-33531236,
33531973-33532118,33532262-33532281,33532365-33532500,
33532585-33532804,33532905-33533085,33533495-33533518,
33534127-33534341,33534425-33534705,33535987-33536210
Length = 548
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = -1
Query: 497 WLNTFYIVKRKFAGAPVASLLVDRHVVIAVDHSVAVAVLAKSSHVVLNGLPGAVRVY 327
WL ++ AG +A+LLV VV+ V + V V L G+P A+ +Y
Sbjct: 297 WLRDLRVLSYLSAGGVIATLLVFLSVVL-VGATDGVGFHLTGKAVNLGGIPFAIGIY 352
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,672,106
Number of Sequences: 37544
Number of extensions: 379565
Number of successful extensions: 1049
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -