Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4989
         (367 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces...    25   3.7  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    25   3.7  
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo...    25   3.7  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    24   6.4  
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom...    24   8.5  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    24   8.5  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    24   8.5  

>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +2

Query: 98  LTASSC-YYTGAIASRLRRAQGEFIVRAGQREVLKLHVTP 214
           L A  C + + A  S LRR  G  ++RAG R  +  H  P
Sbjct: 7   LAAKHCPFVSKADPSALRRMAGAGLIRAGARCPVVRHALP 46


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +2

Query: 86   IWCVLTASSCYYTGAIASRLRRAQGEFIVRA-GQREVLKLHVT 211
            IW  L+   C+  G+I SRL +  G       G RE + L +T
Sbjct: 1736 IWNKLSYIDCFSIGSIPSRLAKFVGNTAFTGFGVREAIPLLLT 1778


>SPAC22E12.14c |sck2||serine/threonine protein kinase
           Sck2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 646

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 215 EESHEASIPLAVQLGR*THPAPFADAKRSRQCSSMKML 102
           E  HE S  L +Q+G      P  DA  + +CS +  L
Sbjct: 84  EVDHEPSGYLKLQIGSLVLGGPHTDAALAMECSRLNQL 121


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +2

Query: 35   PFDCTMNIQNKSHEDRTIWCVLTASSCYYTGAIASRLRRAQGEFIVR 175
            P D   +  + S       CV+T ++ Y TG     LRR  G  I R
Sbjct: 958  PSDSRFHFNSSSKSWLYRGCVITINAEYETGDYQMILRRMSGTTIYR 1004


>SPAPB1A11.01 ||SPAPB24D3.11|membrane
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 495

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 73  RRPYHLVCSNSIFMLL 120
           RRP HL+C+  I +L+
Sbjct: 274 RRPLHLLCTQPIMILI 289


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 248  WSDLLVYPCILEESHEASIPLAVQLGR 168
            WSD+L Y    E++  AS+P  + L +
Sbjct: 1280 WSDVLTYAFNEEKTIRASLPTLICLSK 1306


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 155 APFADAKRSRQCSSMKMLLEHTRWYGL 75
           AP + +  +   SS+  LL H   YGL
Sbjct: 26  APVSSSNSANSASSVAALLSHAPMYGL 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,590,984
Number of Sequences: 5004
Number of extensions: 29624
Number of successful extensions: 72
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)