Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4989
         (367 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0262 + 16307003-16308416,16309501-16309595,16309954-163099...    31   0.37 
03_01_0632 - 4647271-4648704                                           31   0.37 
01_05_0586 + 23443371-23444645                                         28   2.0  
03_06_0042 + 31247084-31247641,31248396-31248482,31248684-312487...    28   2.6  
01_07_0008 + 40389744-40389896,40389967-40390048,40390693-403908...    28   2.6  
11_01_0315 - 2347254-2347345,2347485-2347895,2348182-2349633,234...    27   3.4  
08_02_0368 - 16312961-16314588,16314794-16314890,16316360-163164...    27   6.0  
04_03_0877 - 20495102-20496037                                         26   7.9  

>10_08_0262 +
           16307003-16308416,16309501-16309595,16309954-16309959,
           16310567-16310671
          Length = 539

 Score = 30.7 bits (66), Expect = 0.37
 Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 5/51 (9%)
 Frame = -3

Query: 158 PAPFADAKRSRQCSSMKMLLEHTRWYGLR-----EICSECSWCNQMVVRKA 21
           P PF +  R R+C  +K  L H RW          + S   WC    V  A
Sbjct: 308 PDPFLEWLRRRECKDLKRTLVHGRWKATTWRMPIPVTSWDDWCRDCAVESA 358


>03_01_0632 - 4647271-4648704
          Length = 477

 Score = 30.7 bits (66), Expect = 0.37
 Identities = 19/41 (46%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 172 PSWTARGIEASC-DSSRIHG*TSRSLHGEGACHGLCKTNSP 291
           PS TA GI+    DSS  HG  SR LHG   CH   +   P
Sbjct: 375 PSPTASGIKLDMEDSSSSHG--SRELHGLIKCHSEARVKPP 413


>01_05_0586 + 23443371-23444645
          Length = 424

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 95  VLTASSCYYTGAIASRLRRAQG 160
           VL  + CYYTG +  R  RA G
Sbjct: 74  VLVGAVCYYTGTLIERCMRADG 95


>03_06_0042 +
           31247084-31247641,31248396-31248482,31248684-31248779,
           31248897-31248998,31249455-31249541,31249692-31249759,
           31249879-31249963
          Length = 360

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
 Frame = +2

Query: 83  TIWCVLTASSCYYTGAIASRLRRAQGEFIVRAGQREVLKLHVTPQEYMDKLVDHSMVKVH 262
           TI C++ A+  +    +  R+  +  +    AG   + +L +  QEY   +  H+   V 
Sbjct: 171 TIICLMAATPLHRHAKVV-RMVVSTYQAASGAGAAAMEELKLQTQEYAFNIFSHNAPIVE 229

Query: 263 ------AMAYVKQTRQAWSDED 310
                  M  VK+TR+ W+D+D
Sbjct: 230 NGYNEEEMKMVKETRKIWNDKD 251


>01_07_0008 +
           40389744-40389896,40389967-40390048,40390693-40390808,
           40391107-40391195,40391859-40391904,40392248-40392716,
           40392825-40392952,40393182-40393253,40393512-40393885,
           40394005-40394545,40394653-40394952,40395167-40395268
          Length = 823

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -3

Query: 116 SMKMLLEHTRWYGLREICSECSWCNQ 39
           S  M++   +W+ +RE+  E S+C++
Sbjct: 333 SASMIVTENQWFNIREVSPEWSYCSE 358


>11_01_0315 -
           2347254-2347345,2347485-2347895,2348182-2349633,
           2349688-2350045,2350818-2351177,2351321-2351419,
           2351856-2351948,2352078-2352215,2352389-2352476,
           2352682-2352770,2353113-2353178,2353370-2353481,
           2354702-2354901
          Length = 1185

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 197 SIPLAVQLGR*THPAPFADAKRSRQCSSMKML 102
           S PLA  +GR  HPAP A A   +  +S+  L
Sbjct: 487 SPPLARHIGRRLHPAPLAVASNRKTPASLGQL 518


>08_02_0368 -
           16312961-16314588,16314794-16314890,16316360-16316489,
           16316605-16316657
          Length = 635

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +2

Query: 2   PHGIDIVPYGQPFDCTMNIQNKSHEDRTIWCVLTASSCYYTGAI 133
           PH + I PY +  DC   +   S +   +  VL+A++ + T  +
Sbjct: 151 PHFVSIGPYNRSCDCKSKLARDSDKVGRLQEVLSAAAAHTTAPL 194


>04_03_0877 - 20495102-20496037
          Length = 311

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +3

Query: 102 QHLHATTLARSLRVCEGRRVSSSS 173
           + LHA  LAR+LR  +GR ++++S
Sbjct: 17  EDLHADVLARALRRLDGRSLAAAS 40


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,192,344
Number of Sequences: 37544
Number of extensions: 229427
Number of successful extensions: 566
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)