Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4989
         (367 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    21   6.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   6.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.0  

>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 294 LGLMKMTFRCTSHACKC 344
           LG +KM  R  +  CKC
Sbjct: 29  LGALKMHIRTHTLPCKC 45


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 5/8 (62%), Positives = 8/8 (100%)
 Frame = -3

Query: 278 LHKPWHAP 255
           +H+PW+AP
Sbjct: 461 IHEPWNAP 468


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = -3

Query: 329  ACAAESHL-HQTKPGEFVLHKPWHAP 255
            +C  E+   H T   + ++H P H+P
Sbjct: 1345 SCYVENTFGHDTVTHQLIVHAPPHSP 1370


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,715
Number of Sequences: 438
Number of extensions: 2206
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8680350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)