Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4986
(780 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58085-1|AAC47122.1| 780|Caenorhabditis elegans CUL-3 protein. 215 3e-56
AC024744-3|AAK72067.1| 777|Caenorhabditis elegans Cullin protei... 215 3e-56
AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ... 31 1.2
Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical pr... 30 2.1
AF067945-15|AAC17678.2| 286|Caenorhabditis elegans Serpentine r... 29 4.9
AF016417-2|AAB65279.2| 533|Caenorhabditis elegans Hypothetical ... 29 4.9
Z92785-1|CAB07199.2| 299|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z81034-1|CAB02726.1| 194|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z36238-10|CAL63999.1| 287|Caenorhabditis elegans Hypothetical p... 28 6.5
Z36238-9|CAL63998.1| 335|Caenorhabditis elegans Hypothetical pr... 28 6.5
U56965-10|AAB52670.1| 1041|Caenorhabditis elegans Nicotinamide n... 28 6.5
AF443191-1|AAL60201.1| 285|Caenorhabditis elegans X-box binding... 28 6.5
AF443190-1|AAL60200.1| 287|Caenorhabditis elegans X-box binding... 28 6.5
Z67990-5|CAA91936.2| 638|Caenorhabditis elegans Hypothetical pr... 28 8.6
U88174-6|AAB42272.1| 680|Caenorhabditis elegans Hypothetical pr... 28 8.6
U41037-3|AAA82389.1| 378|Caenorhabditis elegans Hypothetical pr... 28 8.6
AF040657-6|AAB95051.2| 261|Caenorhabditis elegans Hypothetical ... 28 8.6
AB012617-1|BAA33488.1| 638|Caenorhabditis elegans FLR-1 protein. 28 8.6
>U58085-1|AAC47122.1| 780|Caenorhabditis elegans CUL-3 protein.
Length = 780
Score = 215 bits (525), Expect = 3e-56
Identities = 108/198 (54%), Positives = 142/198 (71%), Gaps = 3/198 (1%)
Frame = +1
Query: 178 KMRIRAFPMTMDEKYVERIWSLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLY 357
KMRIR F T+DE+YV + W LLK AIQEIQ+KNNSGLSFEELYRNAYTMVLHKHGERLY
Sbjct: 12 KMRIRPFMATIDEQYVTQTWELLKRAIQEIQRKNNSGLSFEELYRNAYTMVLHKHGERLY 71
Query: 358 TGLKEVVTQHLETKVREDVLHSLHNG-FLQTLNNAWTDHQTSMVMIRDILMYMDRVFV-Q 531
GLK+V+ H+ VR ++ S+++G FL+T+ +W DH +MVMIRDILMYMDR++V Q
Sbjct: 72 NGLKDVIQDHM-ASVRIRIIESMNSGSFLETVAESWADHTVAMVMIRDILMYMDRIYVAQ 130
Query: 532 QNEVDNVYNLGLIIFRDQVVRYGCIRDHLRQTLLELVARERRGEVVDRLAIRNACQMLMV 711
N V VYNLGL +R +++R I D +R LLEL+ +R+ ++ I+NAC ML+
Sbjct: 131 NNHVLPVYNLGLDAYRTEILRQNGIGDRIRDALLELIKLDRKSNQINWHGIKNACDMLIS 190
Query: 712 L-VSLPSCYEETLKPFLL 762
L + + YE+ + LL
Sbjct: 191 LGIDSRTVYEDEFERPLL 208
>AC024744-3|AAK72067.1| 777|Caenorhabditis elegans Cullin protein 3
protein.
Length = 777
Score = 215 bits (525), Expect = 3e-56
Identities = 108/198 (54%), Positives = 142/198 (71%), Gaps = 3/198 (1%)
Frame = +1
Query: 178 KMRIRAFPMTMDEKYVERIWSLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLY 357
KMRIR F T+DE+YV + W LLK AIQEIQ+KNNSGLSFEELYRNAYTMVLHKHGERLY
Sbjct: 12 KMRIRPFMATIDEQYVTQTWELLKRAIQEIQRKNNSGLSFEELYRNAYTMVLHKHGERLY 71
Query: 358 TGLKEVVTQHLETKVREDVLHSLHNG-FLQTLNNAWTDHQTSMVMIRDILMYMDRVFV-Q 531
GLK+V+ H+ VR ++ S+++G FL+T+ +W DH +MVMIRDILMYMDR++V Q
Sbjct: 72 NGLKDVIQDHM-ASVRIRIIESMNSGSFLETVAESWADHTVAMVMIRDILMYMDRIYVAQ 130
Query: 532 QNEVDNVYNLGLIIFRDQVVRYGCIRDHLRQTLLELVARERRGEVVDRLAIRNACQMLMV 711
N V VYNLGL +R +++R I D +R LLEL+ +R+ ++ I+NAC ML+
Sbjct: 131 NNHVLPVYNLGLDAYRTEILRQNGIGDRIRDALLELIKLDRKSNQINWHGIKNACDMLIS 190
Query: 712 L-VSLPSCYEETLKPFLL 762
L + + YE+ + LL
Sbjct: 191 LGIDSRTVYEDEFERPLL 208
>AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical
protein R52.2 protein.
Length = 1019
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/71 (23%), Positives = 37/71 (52%)
Frame = -1
Query: 666 NFASTFTSNKL*QCLTKMISNASITNNLISEDNEPKIVDIVNFILLNKNSVHIHQNISYH 487
N +++++L Q ++ I + ++ N IS DN+ + + + ++++ H HQ +
Sbjct: 246 NSERNYSASELLQTVSGYIKSETLVNT-ISNDNKEPLDRKLTTMSVHQHPRHTHQQLPNK 304
Query: 486 DHAGLMVSPCI 454
G +SPCI
Sbjct: 305 TTNGQTLSPCI 315
>Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical
protein B0365.7 protein.
Length = 2769
Score = 29.9 bits (64), Expect = 2.1
Identities = 31/134 (23%), Positives = 69/134 (51%), Gaps = 3/134 (2%)
Frame = +1
Query: 259 QEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYTGLKEVVTQHLETKVREDVLHSLHNGF 438
++I+K++ S ++ EL A +++L + + TG++EV TQ R DVL L N
Sbjct: 407 RDIKKRSLSKIT--ELEEKAKSLILIRLIGK-NTGIREVFTQCSAKLFRNDVLVQLRN-- 461
Query: 439 LQTLNNAWTDHQTSMVMI-RDILMYMDRVFVQQNEVDNVYNLGLIIFR-DQVVRYGCIR- 609
++ + N + + ++ + +YM+ + ++ Y + + F+ +Q+V + R
Sbjct: 462 IEEVQNELPSIKDRIKIVGQTYKVYMEYFTMPDYDIRQFYEISRLGFKLEQLVNFVWDRI 521
Query: 610 DHLRQTLLELVARE 651
+H RQ + + V+ +
Sbjct: 522 NHERQWITKQVSEQ 535
>Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical
protein B0365.7 protein.
Length = 2769
Score = 29.9 bits (64), Expect = 2.1
Identities = 31/134 (23%), Positives = 69/134 (51%), Gaps = 3/134 (2%)
Frame = +1
Query: 259 QEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYTGLKEVVTQHLETKVREDVLHSLHNGF 438
++I+K++ S ++ EL A +++L + + TG++EV TQ R DVL L N
Sbjct: 407 RDIKKRSLSKIT--ELEEKAKSLILIRLIGK-NTGIREVFTQCSAKLFRNDVLVQLRN-- 461
Query: 439 LQTLNNAWTDHQTSMVMI-RDILMYMDRVFVQQNEVDNVYNLGLIIFR-DQVVRYGCIR- 609
++ + N + + ++ + +YM+ + ++ Y + + F+ +Q+V + R
Sbjct: 462 IEEVQNELPSIKDRIKIVGQTYKVYMEYFTMPDYDIRQFYEISRLGFKLEQLVNFVWDRI 521
Query: 610 DHLRQTLLELVARE 651
+H RQ + + V+ +
Sbjct: 522 NHERQWITKQVSEQ 535
>AF067945-15|AAC17678.2| 286|Caenorhabditis elegans Serpentine
receptor, class x protein16 protein.
Length = 286
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -2
Query: 233 IRSTYF--SSIVIGKALILILPGILSFGKVLFIIGALIYFLH 114
I+ T+F ++I G+ I+ +LS ++FI+G L F+H
Sbjct: 220 IKQTFFQGTTIFTGQVTYYIIAPLLSNSIIIFIVGTLWAFMH 261
>AF016417-2|AAB65279.2| 533|Caenorhabditis elegans Hypothetical
protein F17A9.2 protein.
Length = 533
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +1
Query: 301 ELYRNAYTMVLHKHGERLYTGLKEVVTQHLETKV 402
E +++A+T++ +K G+ L T + TQHL+ ++
Sbjct: 380 EKFKSAFTLMANKQGKALVTFERNFRTQHLQVQM 413
>Z92785-1|CAB07199.2| 299|Caenorhabditis elegans Hypothetical
protein F31E9.2 protein.
Length = 299
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -1
Query: 279 VFLLYFLYGIL*QAPYTLHILLIHSHRKSSDPHFARYFVF 160
+FL LYG+ Y L ++I HRK+ D F + +VF
Sbjct: 7 LFLASTLYGLPSLILYILTFVVILRHRKTFDSSFFQLYVF 46
>Z81034-1|CAB02726.1| 194|Caenorhabditis elegans Hypothetical
protein C15C6.1 protein.
Length = 194
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -2
Query: 248 FNKLHIRSTYFSSIVIGKALILILPGIL--SFGKVLFII 138
F KLHI T + +G ILI+ G L F K +F++
Sbjct: 26 FGKLHIHHTMNVIVAVGVLAILIIMGALYMKFRKAMFVM 64
>Z36238-10|CAL63999.1| 287|Caenorhabditis elegans Hypothetical
protein R74.3b protein.
Length = 287
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -1
Query: 588 NLISEDNEPKI-VDIVNFILLNKNSVHIHQNISYHDHAGLMVSPCIV 451
NL+++ NE + ++ N L+N N I+QN+ Y + V+P +V
Sbjct: 116 NLMNQQNESVMYMEENNENLMNSNDACIYQNVVYEEEVVGEVAPVVV 162
>Z36238-9|CAL63998.1| 335|Caenorhabditis elegans Hypothetical
protein R74.3a protein.
Length = 335
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -1
Query: 588 NLISEDNEPKI-VDIVNFILLNKNSVHIHQNISYHDHAGLMVSPCIV 451
NL+++ NE + ++ N L+N N I+QN+ Y + V+P +V
Sbjct: 116 NLMNQQNESVMYMEENNENLMNSNDACIYQNVVYEEEVVGEVAPVVV 162
>U56965-10|AAB52670.1| 1041|Caenorhabditis elegans Nicotinamide
nucleotide transhydrogenaseprotein 1 protein.
Length = 1041
Score = 28.3 bits (60), Expect = 6.5
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 3/117 (2%)
Frame = +1
Query: 61 IVKNKYTVL*YKNKLFCWCKKYIKAPMMKSTLPKDKIPGKMRIRAFPMTMDEKYVERIWS 240
I+++K T L Y +LF +K I+ +K +PK+ PG+ R+ P +
Sbjct: 3 ILRSKITRL-YWFRLFSNGQKKIEYSKLKVAVPKEIFPGEKRVSLSP--------NGVAL 53
Query: 241 LLKNAIQEIQKKNN---SGLSFEELYRNAYTMVLHKHGERLYTGLKEVVTQHLETKV 402
L KN I + ++N +G S EE R+ + KH E T + V E +V
Sbjct: 54 LKKNGISVLIEENAGVLAGYSNEEYVRSGAD--VGKHNEVFNTDIMLKVRPPTENEV 108
>AF443191-1|AAL60201.1| 285|Caenorhabditis elegans X-box binding
protein processedisoform protein.
Length = 285
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -1
Query: 588 NLISEDNEPKI-VDIVNFILLNKNSVHIHQNISYHDHAGLMVSPCIV 451
NL+++ NE + ++ N L+N N I+QN+ Y + V+P +V
Sbjct: 116 NLMNQQNESVMYMEENNENLMNSNDACIYQNVVYEEEVVGEVAPVVV 162
>AF443190-1|AAL60200.1| 287|Caenorhabditis elegans X-box binding
protein unprocessedisoform protein.
Length = 287
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -1
Query: 588 NLISEDNEPKI-VDIVNFILLNKNSVHIHQNISYHDHAGLMVSPCIV 451
NL+++ NE + ++ N L+N N I+QN+ Y + V+P +V
Sbjct: 116 NLMNQQNESVMYMEENNENLMNSNDACIYQNVVYEEEVVGEVAPVVV 162
>Z67990-5|CAA91936.2| 638|Caenorhabditis elegans Hypothetical
protein F02D10.5 protein.
Length = 638
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -2
Query: 425 NECNTSSRTLVSRC*VTTSLRPVYSLSPCLCSTIVYALR*SSSNDS 288
N +T + C + LR V +L C CS + Y+ R S SND+
Sbjct: 295 NRNDTDVPYTATHCEIDCKLRKVRNL--CGCSPLAYSARESGSNDT 338
>U88174-6|AAB42272.1| 680|Caenorhabditis elegans Hypothetical
protein M01A10.1 protein.
Length = 680
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -1
Query: 618 KMISNASITNNLISEDNEPKIVDIVNFILLNKNSVHI 508
K ISN + T D++PK+++ ++ NKN V++
Sbjct: 354 KKISNETETKIQFMPDDDPKLMERTLVVIGNKNKVYV 390
>U41037-3|AAA82389.1| 378|Caenorhabditis elegans Hypothetical
protein T24C12.1 protein.
Length = 378
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -2
Query: 269 CI-SCMAFFNKLHIRSTYFSSIVIGKALILILPGILSFGKVLFIIGALIYFL 117
C+ SC +FF+K+ RS +F + GKA L ++ V +GA I L
Sbjct: 52 CVFSCSSFFSKIFPRSCFF--MRFGKAAWLYGSNMILLLAVFLFLGATIVML 101
>AF040657-6|AAB95051.2| 261|Caenorhabditis elegans Hypothetical
protein T20H9.2 protein.
Length = 261
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = -2
Query: 299 SNDSPELFFFCISCMAFFNKLHIRSTYFSSIVIGKAL 189
SND + F FC+ ++ + LHI++ YF SI I AL
Sbjct: 226 SNDWWDGFCFCVKRLSSDDFLHIKN-YFDSIFIEPAL 261
>AB012617-1|BAA33488.1| 638|Caenorhabditis elegans FLR-1 protein.
Length = 638
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -2
Query: 425 NECNTSSRTLVSRC*VTTSLRPVYSLSPCLCSTIVYALR*SSSNDS 288
N +T + C + LR V +L C CS + Y+ R S SND+
Sbjct: 295 NRNDTDVPYTATHCEIDCKLRKVRNL--CGCSPLAYSARESGSNDT 338
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,447,649
Number of Sequences: 27780
Number of extensions: 386963
Number of successful extensions: 1264
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1259
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -