Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4985
         (416 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    27   0.88 
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    25   4.7  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   6.2  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   6.2  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    24   8.2  

>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 27.5 bits (58), Expect = 0.88
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = -2

Query: 301 GWITGKKFQSDSHNISKTQFNSLTAVSRSNVTMN*IKLIITIICCYRLIAHITV 140
           GWI  +      HN S T  +  +A+  SNV +N   ++I++   Y +   +++
Sbjct: 631 GWIAYRAISDAIHNASSTSSSYTSALLNSNVFIN---IVISLSSTYGMYLVVSI 681


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -2

Query: 349 PIVSKGPLTQE*SKTLGWITGKKFQSDSHNISKTQFNSLTAVSRSNV 209
           P +SK    +   + LGW  GK      +  SK    ++  VSRS +
Sbjct: 648 PEISKENPGRRLLEKLGWYAGKGLGHPENEGSKDSLRAIVKVSRSGL 694


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 374  CHHSTVVPTHCFKRSVNARIIENTGLDH 291
            CH S  V  H   RSV+ + IE+   D+
Sbjct: 2980 CHFSRAVYKHMLHRSVSVKDIESLDPDY 3007


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = -2

Query: 334 GPLTQE*SKTLGWITGKKFQSDSHNISKTQFNSLTAVSRSNVTMN*IKLIITIICCYRLI 155
           G L Q  +  L  + G+ F +        ++N L+A S   V      L++TI+ CY +I
Sbjct: 530 GALLQIVTLLLSKVLGRIFDNTPRK-KWNRWNQLSAPSWGTVYPV-YSLLVTIMICYSII 587

Query: 154 AHITV 140
           A I +
Sbjct: 588 APIII 592


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 262 NISKTQFNSLTAVSRSNV 209
           NI K  FNSLT+++ SN+
Sbjct: 629 NILKRIFNSLTSINDSNI 646


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,578,784
Number of Sequences: 5004
Number of extensions: 27119
Number of successful extensions: 65
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)