Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4985
         (416 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040656-3|AAB95049.1|  385|Caenorhabditis elegans Innexin prote...    28   2.4  
Z78540-2|CAB01737.1|  900|Caenorhabditis elegans Hypothetical pr...    27   5.5  
U80023-9|AAG24041.1|  257|Caenorhabditis elegans Hypothetical pr...    27   5.5  
U39472-5|AAK31393.1|  128|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z93380-6|CAB07602.2|  339|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z81587-13|CAB04710.2|  339|Caenorhabditis elegans Hypothetical p...    26   9.5  
AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical ...    26   9.5  

>AF040656-3|AAB95049.1|  385|Caenorhabditis elegans Innexin protein
           13 protein.
          Length = 385

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 301 PVFSIILALTDLLKQWVGTTVL*WQYASSTASW 399
           P+  +I ALT   KQ+VG  +  W  A  T +W
Sbjct: 29  PMLLVIFALTLSAKQYVGQPIQCWIPAQFTGAW 61


>Z78540-2|CAB01737.1|  900|Caenorhabditis elegans Hypothetical
           protein C33G3.4 protein.
          Length = 900

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 310 KTLGWITGKKFQSDSHNISKTQF 242
           K   WI    F+SD  NI+KT+F
Sbjct: 358 KGTNWIPVSMFRSDRENIAKTEF 380


>U80023-9|AAG24041.1|  257|Caenorhabditis elegans Hypothetical
           protein F07C4.10 protein.
          Length = 257

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 414 ALPSYPACCGRCVLPS*YRCSHPLFQKV 331
           A+ S P  CG C L   Y+CS+  F ++
Sbjct: 100 AIASCPKNCGYCCLTPDYKCSNVAFPRL 127


>U39472-5|AAK31393.1|  128|Caenorhabditis elegans Hypothetical
           protein B0304.4 protein.
          Length = 128

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 130 AREDRVTRAFSCAIGD*NFIEKCGRQVPSKALA 32
           A  D   R  S AIG  NF+ KC ++ P  +L+
Sbjct: 47  ANADIKNRVCSAAIGRVNFVSKCLKKFPEVSLS 79


>Z93380-6|CAB07602.2|  339|Caenorhabditis elegans Hypothetical
           protein F28C12.7 protein.
          Length = 339

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -2

Query: 238 SLTAVSRSNVTMN*IKLIITIICCYRLIAHITVRRNAREDRVTRAF 101
           ++ A+ R N+  N  +LI+ I+C    + H T     R  ++ R+F
Sbjct: 49  AIQALLRHNIFSNSTRLIL-IVCLLNSVVHQTTMMETRVRQIYRSF 93


>Z81587-13|CAB04710.2|  339|Caenorhabditis elegans Hypothetical
           protein F28C12.7 protein.
          Length = 339

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -2

Query: 238 SLTAVSRSNVTMN*IKLIITIICCYRLIAHITVRRNAREDRVTRAF 101
           ++ A+ R N+  N  +LI+ I+C    + H T     R  ++ R+F
Sbjct: 49  AIQALLRHNIFSNSTRLIL-IVCLLNSVVHQTTMMETRVRQIYRSF 93


>AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical
           protein Y39A1C.2 protein.
          Length = 1066

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 304 LGWITGKKFQSDSHNISKTQFNSLTAVSRSNVTM 203
           +G++T KKF         T FN    + +SN T+
Sbjct: 36  IGYLTRKKFHGKIKTFRPTFFNDFNDLEKSNKTL 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,859,646
Number of Sequences: 27780
Number of extensions: 153674
Number of successful extensions: 458
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)