Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4980
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|...    52   7e-08
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    28   1.7  
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma...    27   3.9  
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    26   6.9  
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S...    25   9.1  
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c...    25   9.1  
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr...    25   9.1  
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.1  

>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 52.4 bits (120), Expect = 7e-08
 Identities = 27/71 (38%), Positives = 40/71 (56%)
 Frame = +3

Query: 87  SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTG 266
           SGV VS  C   ++E+K  K  RYVVF + D K   V      + +++ FL DL +    
Sbjct: 4   SGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTDKDFDTFLGDLPE---K 60

Query: 267 ECRYGLFDFEY 299
           +CRY ++DFE+
Sbjct: 61  DCRYAIYDFEF 71



 Score = 36.3 bits (80), Expect = 0.005
 Identities = 14/25 (56%), Positives = 19/25 (76%)
 Frame = +1

Query: 358 SWCPDTAKVKKKMLYSSSFDALKKS 432
           SW PD A +K KM+YSSS D L+++
Sbjct: 85  SWSPDVAPIKSKMVYSSSKDTLRRA 109


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
 Frame = +1

Query: 367 PDTAKVKKKMLY--SSSFDALKKSLVRSSEVHPSDRPLGSVSGGRRREAPRHRSPINSIY 540
           PD  K  K      SS+  ++  S + +  +H    P  SV       A   R P + I 
Sbjct: 194 PDIQKQPKGFFSYPSSTVSSIAPSTLEAGNLHSQQPPKFSVDSSVDDNAITPRKPFSKIP 253

Query: 541 TRARDETEPALRHS 582
            R    T+P L +S
Sbjct: 254 NRLSPSTQPLLSNS 267


>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 328

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +1

Query: 358 SWCPDTAKVKKKMLYSSS 411
           S+ P+ A V++KMLY+SS
Sbjct: 85  SYVPENANVRRKMLYASS 102


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +1

Query: 472 LGSVSGGRRREAPRHRSPINSIYTRARDE---TEPALRHSCPDDTRPRHH*PLSIITKEN 642
           LG   G ++ E+ R + P  S    +       EP +RHS     RP+ H   S +T+++
Sbjct: 20  LGEEDGRQKGESSRKKRPPLSRKNPSNVSFWSNEPIIRHSSVKTDRPQFHRADSTVTEQS 79


>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 20  CRCRGVGEVSGVIFT*ITSKNGV 88
           CRC G+ ++SG I   + SKNG+
Sbjct: 330 CRCAGIKDISGEI---LGSKNGM 349


>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
           complex subunit Rrn5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 556

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = -3

Query: 579 VSESGFGFVASSCVNAVYWRSVARSFSSTAS*DASERSVAWMYF*TPDKGLFQSVER 409
           + E  +G ++ SCV+  YW +  +     A     +R +  + +  P K   Q +ER
Sbjct: 56  LEEEQWGVLSGSCVDGTYWSAEEKELFFQAVARNGKRDLDLIAYSIPSKSAVQ-IER 111


>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 14/61 (22%), Positives = 31/61 (50%)
 Frame = +3

Query: 114 KTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTGECRYGLFDF 293
           K + + ++ + K ++     +D K+ D + +  +  EY  F ++L+   TG+  Y   DF
Sbjct: 108 KCSSDFLEANVKSQFTTCENKDSKE-DYQILHNKRLEYVSFNDELKSLETGQPLYCFQDF 166

Query: 294 E 296
           +
Sbjct: 167 Q 167


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
 Frame = -2

Query: 313 WHWCVYSKSNRPY--LHSPVPPFCRSSRNCSYSALRSPTVSTSICF 182
           W++  Y+ S R Y      VPP+CR         +R+     + CF
Sbjct: 122 WNFVDYALSLRKYGWTDDVVPPYCRKVLTYKSLGIRTAVYVGAFCF 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,797,882
Number of Sequences: 5004
Number of extensions: 52392
Number of successful extensions: 181
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)