Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4980
         (770 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   3.1  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   4.2  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.3  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   7.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   9.6  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 319 VPWHWCVYSKSNRPYLH 269
           +P HW VY + N P LH
Sbjct: 33  IPEHWLVYPEPN-PSLH 48


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 606 SWPRVVRAGVSESGFGFVASSCVNAVYWRSV 514
           +W      GV+  G G VAS   +A  W+S+
Sbjct: 907 TWSNSQVQGVAVPGSGIVASGQQHAGGWQSI 937


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +2

Query: 431 PLSGVQKYIQATDLSEASQEAVEEKLRATDRQ*TAFTH 544
           PL  +  + +  DLS + +  +EE      R   AF+H
Sbjct: 440 PLPPLPLHTECEDLSVSGEAGIEEVKSPVLRSPPAFSH 477


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +2

Query: 431 PLSGVQKYIQATDLSEASQEAVEEKLRATDRQ*TAFTH 544
           PL  +  + +  DLS + +  +EE      R   AF+H
Sbjct: 440 PLPPLPLHTECEDLSVSGEAGIEEVKSPVLRSPPAFSH 477


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
 Frame = +2

Query: 494 VEEKLRATDRQ*TAFTHELATKPNPLSDTPALTTRGHDTTSRLVLLQRKTN-SINMIDFT 670
           + +K++ T          L  +   +   P +T  GH    +  LL    N SI   +F 
Sbjct: 117 ISKKIKKTMENKDITKRPLPNESQLIKRHPIVTIMGHVDHGKTTLLDALRNTSIAKSEF- 175

Query: 671 GGRTSCESA 697
           GG T C  A
Sbjct: 176 GGITQCIGA 184


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 722 GKGRWYLPA 696
           G G+WYLP+
Sbjct: 236 GDGKWYLPS 244


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,191
Number of Sequences: 438
Number of extensions: 4016
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)