Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4977
(735 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 33 0.042
SPBC21B10.12 |rec6||meiotic recombination protein Rec6|Schizosac... 30 0.30
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a... 29 0.91
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy... 29 0.91
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch... 28 1.2
SPAC5H10.08c |pan6||pantoate-beta-alanine ligase |Schizosaccharo... 26 4.8
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 26 6.4
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 26 6.4
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 25 8.5
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos... 25 8.5
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 33.1 bits (72), Expect = 0.042
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = +1
Query: 232 VILTSLRILILVTKSIRI-FRRKN*VVSQKPLKNNLKFWRI 351
V+LTS ++ V + R FRRKN VV +K L + ++F+RI
Sbjct: 452 VVLTSYNVIESVYRKERSGFRRKNGVVKEKSLLHQMEFYRI 492
>SPBC21B10.12 |rec6||meiotic recombination protein
Rec6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 30.3 bits (65), Expect = 0.30
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +3
Query: 327 KQSQILENPEEEKSYTFASLLRNSKLMDLGDPVGKTVIGKIFHVVED 467
KQ + + EE K Y+ +SLL +S+L+ PV T + +V ED
Sbjct: 106 KQKLQVADDEENKQYSESSLLDDSQLLCSSPPVDSTEEARTCNVEED 152
>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 216
Score = 28.7 bits (61), Expect = 0.91
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -2
Query: 650 QVIYSLPLEV*DLCSILKKRDDNSKSLICIRTLGAPH 540
Q+I ++ L V L S+LKK N SL+ T+G PH
Sbjct: 177 QLIANIMLAVNFLVSLLKKGWQNIGSLVVKSTMGKPH 213
>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 278
Score = 28.7 bits (61), Expect = 0.91
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = +3
Query: 189 IEKSNHLIR-VLNLCSYSNIPPYSDSGNEIDKDISQE-KLSGFAKAFEKQSQILENPEE- 359
I+K N+ R ++ + Y IPP + ++ + Q+ K F E SQ N +
Sbjct: 84 IDKKNNTYRAIVTIAPYQKIPPSKVKADSLEGSLEQDPKFQEFKVQRESYSQTASNDDVI 143
Query: 360 EKSYTFASLLR 392
EK T LL+
Sbjct: 144 EKLQTSTPLLQ 154
>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 564 YPNSRCPSRILHLSNLVLYKHNEISI 487
Y + RC + + LSN VLYK+N + +
Sbjct: 56 YADGRCSAAMRSLSNYVLYKNNPLVV 81
>SPAC5H10.08c |pan6||pantoate-beta-alanine ligase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 283
Score = 26.2 bits (55), Expect = 4.8
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = +3
Query: 273 IDKDISQEKLSGFAKAFEKQSQILENPEEEKSYTFASLLRNSKLMDLGDPVGK-----TV 437
+D+D SQ + G + + L PE + TF + + S +++ G TV
Sbjct: 75 MDQDCSQLQNLGVDLVYAPTVEELY-PEGSQDITFVDVPKLSTMLEGASRPGHFRGVTTV 133
Query: 438 IGKIFHVVEDDL 473
+ K+FH+V D+
Sbjct: 134 VSKLFHIVNPDV 145
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/33 (33%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Frame = +1
Query: 571 NDLELSSRFFRIEHRSY--TSRGRL*ITWYYIY 663
N+LE S+ +R+ +Y T+ GR+ +++YY++
Sbjct: 1600 NELEKSACIYRVNEETYAPTTLGRI-VSYYYLF 1631
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 25.8 bits (54), Expect = 6.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 131 HDTIQEYQTEIFHAKFIEW 187
+DTIQ + E+FH F +W
Sbjct: 946 YDTIQRSKDELFHYCFYDW 964
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2685
Score = 25.4 bits (53), Expect = 8.5
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 415 PKSINFEFRSNEAKV*LFSSSGFSRI*DC 329
P+ NF+FR A+V +F S + DC
Sbjct: 766 PEGWNFDFRLKNARVSIFLDDDVSLLLDC 794
>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 25.4 bits (53), Expect = 8.5
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 369 YTFASLLRNSKLMDLGDPVGKT-VIGKIFHVVEDDLYIDFGWKFHC 503
YTFAS LR+ ++ + D + K I +I V DL+ F K HC
Sbjct: 292 YTFASTLRHPNIIKVLDIIYKRHTILQIIEYVPYDLF-TFITKGHC 336
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,928,895
Number of Sequences: 5004
Number of extensions: 63603
Number of successful extensions: 177
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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