Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4976
         (397 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1006 + 8528508-8529285,8529376-8529544,8530179-8530445,853...    28   3.1  
03_06_0259 + 32712976-32714335,32714454-32714587,32714904-327151...    27   5.5  
03_03_0041 - 14007687-14009381                                         27   5.5  
07_01_0766 - 5885207-5885791,5885874-5886224,5886252-5886269,588...    27   7.2  
07_03_1010 - 23276442-23276681,23277022-23277267                       26   9.6  
03_05_0923 + 28848925-28849272,28849636-28849869,28849965-288501...    26   9.6  

>07_01_1006 + 8528508-8529285,8529376-8529544,8530179-8530445,
            8530533-8530878,8530964-8531101,8531197-8531322,
            8531422-8531634,8531721-8531863,8531891-8532009,
            8532099-8532295,8532379-8532729,8532811-8533395
          Length = 1143

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 93   WFLTKFVTTFLPNLFEMRVNGVII 22
            WF++ F+  F+  + EMR +GV I
Sbjct: 957  WFMSLFICIFVTGILEMRWSGVAI 980


>03_06_0259 +
           32712976-32714335,32714454-32714587,32714904-32715144,
           32715254-32715462,32715522-32715583,32715690-32715801,
           32715916-32716208,32716400-32716520
          Length = 843

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +2

Query: 56  LGRNVVTNFV-RNHSNGGIPGENLPFDIHNR 145
           LGR VVT  + RN   GG+PGE   F +  R
Sbjct: 244 LGRKVVTVVLSRNRFTGGLPGEITSFYLLER 274


>03_03_0041 - 14007687-14009381
          Length = 564

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 145 LQADIVFHPICGLWTISTLSHHPSPA 222
           L  D++FHP C   T+S L   P P+
Sbjct: 59  LPGDLLFHPACVRLTLSHLLPSPDPS 84


>07_01_0766 -
           5885207-5885791,5885874-5886224,5886252-5886269,
           5886339-5886541,5886632-5886890,5887052-5887264,
           5887357-5887482,5887590-5887727,5887817-5888162,
           5888254-5888520,5888983-5889172,5889264-5889363,
           5889444-5889694,5889990-5890182,5890313-5890336
          Length = 1087

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 93  WFLTKFVTTFLPNLFEMRVNGV 28
           WF++ F++ F   + EMR +GV
Sbjct: 901 WFISLFISIFATGILEMRWSGV 922


>07_03_1010 - 23276442-23276681,23277022-23277267
          Length = 161

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 184 WTISTLSHHPSPAFEE 231
           W I T+ H PSPA +E
Sbjct: 122 WIIKTMKHEPSPAQDE 137


>03_05_0923 +
           28848925-28849272,28849636-28849869,28849965-28850131,
           28850433-28850651,28850743-28850929,28851012-28851063,
           28851158-28851387,28851619-28851717,28851835-28852565,
           28853004-28853519,28854140-28854398
          Length = 1013

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 184 WTISTLSHHPSPAFEE 231
           W I T+ H PSPA +E
Sbjct: 156 WIIKTMKHEPSPAQDE 171


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,621,354
Number of Sequences: 37544
Number of extensions: 194557
Number of successful extensions: 389
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)