Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4976
         (397 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118515-1|AAM49884.1|   66|Drosophila melanogaster LD14731p pro...    67   9e-12
AE013599-996|AAO41466.1|   66|Drosophila melanogaster CG2249-PB,...    67   9e-12
AE013599-995|AAF58857.2|   66|Drosophila melanogaster CG2249-PA,...    67   9e-12

>AY118515-1|AAM49884.1|   66|Drosophila melanogaster LD14731p
           protein.
          Length = 66

 Score = 66.9 bits (156), Expect = 9e-12
 Identities = 29/62 (46%), Positives = 41/62 (66%)
 Frame = +2

Query: 47  SNKLGRNVVTNFVRNHSNGGIPGENLPFDIHNRYKLTLYFILYAGSGLSAPYLITRHQLL 226
           S+ + RN   + VR   +GG+PGENLPF + N+Y++T  F +    G  +P+LI RHQLL
Sbjct: 5   SSVIARNFSQSMVRFSGHGGVPGENLPFGLTNKYRITALFTIGCVLGFGSPFLIVRHQLL 64

Query: 227 KK 232
           KK
Sbjct: 65  KK 66


>AE013599-996|AAO41466.1|   66|Drosophila melanogaster CG2249-PB,
           isoform B protein.
          Length = 66

 Score = 66.9 bits (156), Expect = 9e-12
 Identities = 29/62 (46%), Positives = 41/62 (66%)
 Frame = +2

Query: 47  SNKLGRNVVTNFVRNHSNGGIPGENLPFDIHNRYKLTLYFILYAGSGLSAPYLITRHQLL 226
           S+ + RN   + VR   +GG+PGENLPF + N+Y++T  F +    G  +P+LI RHQLL
Sbjct: 5   SSVIARNFSQSMVRFSGHGGVPGENLPFGLTNKYRITALFTIGCVLGFGSPFLIVRHQLL 64

Query: 227 KK 232
           KK
Sbjct: 65  KK 66


>AE013599-995|AAF58857.2|   66|Drosophila melanogaster CG2249-PA,
           isoform A protein.
          Length = 66

 Score = 66.9 bits (156), Expect = 9e-12
 Identities = 29/62 (46%), Positives = 41/62 (66%)
 Frame = +2

Query: 47  SNKLGRNVVTNFVRNHSNGGIPGENLPFDIHNRYKLTLYFILYAGSGLSAPYLITRHQLL 226
           S+ + RN   + VR   +GG+PGENLPF + N+Y++T  F +    G  +P+LI RHQLL
Sbjct: 5   SSVIARNFSQSMVRFSGHGGVPGENLPFGLTNKYRITALFTIGCVLGFGSPFLIVRHQLL 64

Query: 227 KK 232
           KK
Sbjct: 65  KK 66


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,802,999
Number of Sequences: 53049
Number of extensions: 339786
Number of successful extensions: 661
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1128794130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)