Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4976
         (397 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83107-7|CAB05501.2|  537|Caenorhabditis elegans Hypothetical pr...    31   0.40 
Z81070-5|CAB02999.2|   84|Caenorhabditis elegans Hypothetical pr...    30   0.69 
Z74034-2|CAE17843.1|  323|Caenorhabditis elegans Hypothetical pr...    29   1.2  
AL117200-14|CAJ85779.1|  465|Caenorhabditis elegans Hypothetical...    26   8.5  
AL117200-12|CAB60583.1|  461|Caenorhabditis elegans Hypothetical...    26   8.5  
AL117200-11|CAD54172.1|  530|Caenorhabditis elegans Hypothetical...    26   8.5  

>Z83107-7|CAB05501.2|  537|Caenorhabditis elegans Hypothetical
           protein F32A7.6 protein.
          Length = 537

 Score = 30.7 bits (66), Expect = 0.40
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 59  GRNVVTN-FVRNHSNGGIPGENLPFDIHNRYKLTLYFILYAGSGLSAPY 202
           GRN   N FV    NGG+ G+N  +D +   + TL F +   SG  A Y
Sbjct: 264 GRNGKGNIFVWASGNGGVNGDNCAYDGYVSNEYTLSFGVIDASGAPAAY 312


>Z81070-5|CAB02999.2|   84|Caenorhabditis elegans Hypothetical
           protein F26E4.6 protein.
          Length = 84

 Score = 29.9 bits (64), Expect = 0.69
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +2

Query: 98  NGGIPGENLPFDIHNRYKLTLYFILYAGSGLSAPYLITRHQLLK 229
           N G     LPF + N++      + +   G  AP+++  +QL K
Sbjct: 38  NDGWASARLPFHVTNKWGFAAKAVTFLAIGFWAPFIVVEYQLRK 81


>Z74034-2|CAE17843.1|  323|Caenorhabditis elegans Hypothetical
           protein F43A11.4 protein.
          Length = 323

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 120 FSPGIPPLEWFLTKFVTTFLPNLFEMRVNGVIIFTFLR 7
           FSP   PL WF    +T  +  +F +  N +II +F+R
Sbjct: 3   FSPDADPLNWFAASVMT--INGVFGITCNTLIIASFIR 38


>AL117200-14|CAJ85779.1|  465|Caenorhabditis elegans Hypothetical
           protein Y50E8A.4c protein.
          Length = 465

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 110 PGENLPFDIHNRYKLTLYFILYAGSGLSAPYLITRHQLLKK 232
           P   L +   +R    LYFI   G GL A  L+T  +L K+
Sbjct: 193 PRRMLQYFNDSRIHACLYFISPTGHGLKALDLVTLRELAKR 233


>AL117200-12|CAB60583.1|  461|Caenorhabditis elegans Hypothetical
           protein Y50E8A.4b protein.
          Length = 461

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 110 PGENLPFDIHNRYKLTLYFILYAGSGLSAPYLITRHQLLKK 232
           P   L +   +R    LYFI   G GL A  L+T  +L K+
Sbjct: 193 PRRMLQYFNDSRIHACLYFISPTGHGLKALDLVTLRELAKR 233


>AL117200-11|CAD54172.1|  530|Caenorhabditis elegans Hypothetical
           protein Y50E8A.4a protein.
          Length = 530

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 110 PGENLPFDIHNRYKLTLYFILYAGSGLSAPYLITRHQLLKK 232
           P   L +   +R    LYFI   G GL A  L+T  +L K+
Sbjct: 262 PRRMLQYFNDSRIHACLYFISPTGHGLKALDLVTLRELAKR 302


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,049,620
Number of Sequences: 27780
Number of extensions: 169919
Number of successful extensions: 347
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)