Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4973
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   3.3  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    26   4.3  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    26   5.7  
SPAP27G11.11c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   10.0 

>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 130 SYDIYHV*KHNVDLSVVNYPTALY 59
           SY++ +V  HN D    NYP AL+
Sbjct: 607 SYNLIYVLGHNADAKGRNYPRALF 630


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 529 RCLMYSLRDDGYYYFYART*LGLIIIIHINSC 434
           +C    + D   Y+F A+T L +I  +++N C
Sbjct: 834 KCSNLKVEDPTKYHFNAKTLLSIIFDVYLNLC 865


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = -2

Query: 647  ICYWNEVPYGTMWRGTLTEEKRP*RKIFII 558
            I YW  VPYG  WR        P   I I+
Sbjct: 2154 INYWLAVPYGQAWRFFWNTSNTPLWSIIIL 2183


>SPAP27G11.11c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 73

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 91  NPRYVFKRDKYHKNFL 138
           NP ++FK D Y K FL
Sbjct: 7   NPHFLFKIDSYSKTFL 22


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,391,810
Number of Sequences: 5004
Number of extensions: 44444
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)