Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4972
         (738 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0320 - 2320317-2320336,2320791-2320902,2321092-2321236,232...    67   1e-11
02_02_0017 - 6131265-6131284,6131654-6131774,6132011-6132146,613...    64   1e-10
02_02_0016 - 6118739-6118758,6119116-6119236,6119478-6119613,611...    64   1e-10
09_04_0281 - 16360082-16361059,16361608-16361688,16363287-163636...    32   0.41 
12_02_0526 - 20032206-20033106,20034853-20035181                       29   2.9  
03_02_0052 + 5285061-5285106,5285711-5285754,5286317-5286539,528...    29   3.9  
06_01_0657 + 4767803-4768114,4768394-4768471,4768763-4768786           29   5.1  

>06_01_0320 -
           2320317-2320336,2320791-2320902,2321092-2321236,
           2321353-2321459,2321572-2321665,2321752-2321948,
           2322311-2322382,2322504-2322618,2323060-2323176,
           2323253-2323344,2323445-2323621,2323746-2323820,
           2323911-2324051,2324671-2324859,2325298-2325363,
           2325445-2325595,2325718-2325786,2326293-2326441,
           2326526-2326657,2326756-2327081,2327167-2327203,
           2327926-2327980,2328242-2328309,2328464-2328466
          Length = 902

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 28/57 (49%), Positives = 39/57 (68%)
 Frame = -1

Query: 696 PEAAFFARSYIPSKICEVVKMWRESVGATNKKSGQSLADPVNYENLFPEYNESLELE 526
           PEAA  ARSY+PSK+ E+V +WR  +   N K+ +SLADP  Y NLF ++  +L +E
Sbjct: 748 PEAALMARSYLPSKVSEIVAIWRNDLSKVNPKAAESLADPSEYPNLFEDWQVALTVE 804


>02_02_0017 -
           6131265-6131284,6131654-6131774,6132011-6132146,
           6132423-6132529,6133006-6133099,6133199-6133395,
           6134401-6134472,6135128-6135304,6135393-6135467,
           6135557-6135697,6136439-6136627,6136969-6137034,
           6137118-6137268,6137596-6137664,6138751-6138899,
           6138969-6139100,6139198-6139523,6139599-6139635,
           6139765-6139803,6140196-6140250,6140363-6140424,
           6140512-6140532,6140820-6140822
          Length = 812

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 26/57 (45%), Positives = 40/57 (70%)
 Frame = -1

Query: 696 PEAAFFARSYIPSKICEVVKMWRESVGATNKKSGQSLADPVNYENLFPEYNESLELE 526
           PEAA  +RSY+PSK+ E+V +W++ +   N K+ +SLADP  Y NLF ++  +L +E
Sbjct: 658 PEAALMSRSYLPSKVPEIVTLWKKDLQKVNPKAAESLADPDEYPNLFEDWQIALNVE 714


>02_02_0016 -
           6118739-6118758,6119116-6119236,6119478-6119613,
           6119887-6119993,6120316-6120409,6120509-6120705,
           6121872-6121943,6122597-6122773,6122862-6122936,
           6123027-6123167,6123837-6124025,6124415-6124480,
           6124564-6124714,6125040-6125200,6126279-6126410,
           6126508-6126833,6126906-6126942,6127056-6127088,
           6127500-6127554,6127666-6127753,6127817-6127862
          Length = 807

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 26/57 (45%), Positives = 40/57 (70%)
 Frame = -1

Query: 696 PEAAFFARSYIPSKICEVVKMWRESVGATNKKSGQSLADPVNYENLFPEYNESLELE 526
           PEAA  +RSY+PSK+ E+V +W++ +   N K+ +SLADP  Y NLF ++  +L +E
Sbjct: 653 PEAALMSRSYLPSKVPEIVTLWKKDLQKVNPKAAESLADPNEYPNLFEDWQIALNVE 709


>09_04_0281 -
           16360082-16361059,16361608-16361688,16363287-16363650,
           16363675-16364348
          Length = 698

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 19/47 (40%), Positives = 22/47 (46%)
 Frame = -1

Query: 639 KMWRESVGATNKKSGQSLADPVNYENLFPEYNESLELEYFQREFGYE 499
           + W ES G   K    S  DP N E+   E N S + E  Q EF YE
Sbjct: 10  RRWPESQGNEEKSQVPSSLDPNNTEDEHQEENNSEDEEEEQEEFLYE 56


>12_02_0526 - 20032206-20033106,20034853-20035181
          Length = 409

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 405 GPLNIPPLLNHNQIQDSEGDSREDATNGNTTS 310
           G  ++PPLL+H  I D + D   + T  NTT+
Sbjct: 288 GGASVPPLLDHQTILDDD-DDHPNKTGSNTTA 318


>03_02_0052 +
           5285061-5285106,5285711-5285754,5286317-5286539,
           5286664-5286827,5286918-5288144
          Length = 567

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 546 NESLELEYFQREFGYEQSTAMEA 478
           NE+L   +F+R FG++ STA  A
Sbjct: 338 NENLHFSFFERRFGWDASTAFYA 360


>06_01_0657 + 4767803-4768114,4768394-4768471,4768763-4768786
          Length = 137

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 424 RRSETTRAPQHTAATQSQSNTRF*RGQQRGCDKWEHDERKSTE 296
           R+ E  R  Q        S  +  +G++RGC+K++ D RK  E
Sbjct: 47  RKEERGRCLQRERKEACGSENKKEKGRERGCEKFKVDGRKKGE 89


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,596,065
Number of Sequences: 37544
Number of extensions: 281122
Number of successful extensions: 861
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)