Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4972
         (738 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68342-4|CAA92776.1| 1000|Caenorhabditis elegans Hypothetical pr...    70   2e-12
U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protei...    31   1.1  
Z70311-6|CAA94379.3|  442|Caenorhabditis elegans Hypothetical pr...    30   2.0  
AF039047-6|AAB94226.1|  186|Caenorhabditis elegans Hypothetical ...    28   7.9  
AC006714-6|AAN84810.2|  339|Caenorhabditis elegans Hypothetical ...    28   7.9  

>Z68342-4|CAA92776.1| 1000|Caenorhabditis elegans Hypothetical protein
            F38E11.5 protein.
          Length = 1000

 Score = 70.1 bits (164), Expect = 2e-12
 Identities = 35/91 (38%), Positives = 55/91 (60%), Gaps = 4/91 (4%)
 Frame = -1

Query: 696  PEAAFFARSYIPSKICEVVKMWRESVGATNKKS----GQSLADPVNYENLFPEYNESLEL 529
            PEAAF AR++ PS++  ++++W+      ++KS    G+SLADPV YENLFP + +SL+ 
Sbjct: 751  PEAAFLARTHAPSRVSSILELWKAKASGHSEKSSRKIGESLADPVKYENLFPGFTQSLKA 810

Query: 528  EYFQREFGYEQSTAMEAVEPNSKITNTERDI 436
            E F RE       A   V P++   N + ++
Sbjct: 811  ESFVREISKIPVPASVRV-PSAATRNIQEEL 840


>U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protein 1
           protein.
          Length = 2427

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = -1

Query: 693 EAAFFARSYIPSKICEVVKMWRESVGATNKKSGQSLADPVNYENLFPEYNESLE 532
           ++  FA  +I  ++ +V  +W E V ATNKK G  L +  N +    ++N ++E
Sbjct: 657 DSGHFAADHIGDRLRQVNNLWNELVDATNKK-GAKLREAGNEQ----QFNRNIE 705


>Z70311-6|CAA94379.3|  442|Caenorhabditis elegans Hypothetical
           protein T25B9.8 protein.
          Length = 442

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 2/125 (1%)
 Frame = -1

Query: 669 YIPSKICEVVKMWRESVGATNKKSGQSLADPVNYENLFPEYNESLELEYFQREF--GYEQ 496
           Y+P+ +    ++ + SVG   +   QS+         FP  NE  E      EF    E 
Sbjct: 110 YMPNSLSNCFQLSQTSVGRERRSDEQSV---------FP--NEMEEESSMDNEFDANSEN 158

Query: 495 STAMEAVEPNSKITNTERDIAAEYAEAKRRGPLNIPPLLNHNQIQDSEGDSREDATNGNT 316
           S  M    PN    + + +  ++Y +A    P+   P L   Q+Q       E++  GN+
Sbjct: 159 SNDMAQSSPNVNSQDIKLEPISDYDDA----PIETKPSLEDLQMQ-------ENSNAGNS 207

Query: 315 TSESQ 301
           TSESQ
Sbjct: 208 TSESQ 212


>AF039047-6|AAB94226.1|  186|Caenorhabditis elegans Hypothetical
           protein K11D12.6 protein.
          Length = 186

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -3

Query: 388 AATQSQSNTRF*RGQQRGCDKWEHDERKSTET*NFNRHHGGDRTGI 251
           A T S  NT    G  + C K EHDE+ +    N+  HHG +  G+
Sbjct: 82  ANTPSTLNT----GGAKNCGKEEHDEKCAEPNKNY-CHHGPNNNGV 122


>AC006714-6|AAN84810.2|  339|Caenorhabditis elegans Hypothetical
           protein Y119D3B.12a protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 496 EHRHGGRRAEFKDHEYGTRHRRGIR-RSETTRAPQHT 389
           +HRH   R E ++H     HRR  R RSE +   + +
Sbjct: 293 DHRHRDHRGEHREHREHKEHRRDDRHRSERSERSERS 329


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,597,367
Number of Sequences: 27780
Number of extensions: 245977
Number of successful extensions: 741
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)