Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4972
         (738 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.0  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    22   5.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.9  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 14/57 (24%), Positives = 24/57 (42%)
 Frame = -1

Query: 612 TNKKSGQSLADPVNYENLFPEYNESLELEYFQREFGYEQSTAMEAVEPNSKITNTER 442
           +N  S +S   P   E+L   +NE +E     +   +  S        +S+I  TE+
Sbjct: 626 SNTTSMESFKPPTLTESLLNRHNEDMEKLMMLKHREFRSSIKASDKLKDSRIKTTEK 682


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -1

Query: 600 SGQSLADPVNYENLFPEYNESLELEYFQREF 508
           +  SL++  NY N +  YN +    Y + ++
Sbjct: 84  NNNSLSNNYNYNNNYNNYNNNYNTNYKKLQY 114


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 390  PPLLNHNQIQDSEGDSRE 337
            PP  NH+Q   S  DS+E
Sbjct: 1862 PPPRNHDQNNSSFNDSKE 1879


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,787
Number of Sequences: 438
Number of extensions: 2948
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)