Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4971
(670 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 115 7e-27
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 66 6e-12
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 51 1e-07
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 43 5e-05
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c... 38 0.001
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats... 38 0.001
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 37 0.003
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c... 37 0.003
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 36 0.004
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo... 35 0.009
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 34 0.021
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 33 0.028
SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces pom... 26 4.3
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 4.3
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.6
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 26 5.6
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 26 5.6
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 25 7.5
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 115 bits (276), Expect = 7e-27
Identities = 64/114 (56%), Positives = 76/114 (66%), Gaps = 2/114 (1%)
Frame = +2
Query: 266 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQG 442
F DF+ GG+SAAVSKTA APIERVKLL+Q Q + + RYKGI + F R E+G
Sbjct: 27 FFFDFMMGGVSAAVSKTAAAPIERVKLLIQNQDEMIRAGRLSHRYKGIGECFKRTAAEEG 86
Query: 443 LLSFWRGNFANDIRYFPTQALNFAFKDKYKPGVPSAVLTRERSS-GVTFAGNLA 601
++S WRGN AN +RYFPTQALNFAFKDK+K +ER FAGNLA
Sbjct: 87 VISLWRGNTANVLRYFPTQALNFAFKDKFK---KMFGYKKERDGYAKWFAGNLA 137
Score = 39.9 bits (89), Expect = 3e-04
Identities = 18/22 (81%), Positives = 19/22 (86%)
Frame = +3
Query: 603 SGGAAGATSLCFVYPLDFARTR 668
SGGAAGA SL FVY LD+ARTR
Sbjct: 138 SGGAAGAASLLFVYSLDYARTR 159
Score = 35.9 bits (79), Expect = 0.005
Identities = 22/92 (23%), Positives = 41/92 (44%)
Frame = +2
Query: 266 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 445
FA + +GG + A S V ++ + L S + ++++ G+VD + + + GL
Sbjct: 132 FAGNLASGGAAGAASLLFVYSLDYARTRLANDAKSAKKGGERQFNGLVDVYRKTYRSDGL 191
Query: 446 LSFWRGNFANDIRYFPTQALNFAFKDKYKPGV 541
+RG + + + L F D KP V
Sbjct: 192 RGLYRGFGPSVVGIVVYRGLYFGMYDTLKPVV 223
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 65.7 bits (153), Expect = 6e-12
Identities = 32/78 (41%), Positives = 51/78 (65%)
Frame = +2
Query: 281 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 460
L+GG++A VS+TAV+P+ER+K++ QVQ+ ++ Y + V+I +GL+ F+R
Sbjct: 25 LSGGVAATVSRTAVSPLERMKIIFQVQN-------NKEYTSLTSTLVKIWNREGLIGFFR 77
Query: 461 GNFANDIRYFPTQALNFA 514
GN N +R FP A+ FA
Sbjct: 78 GNGTNCLRAFPYGAVQFA 95
Score = 41.9 bits (94), Expect = 8e-05
Identities = 26/92 (28%), Positives = 43/92 (46%)
Frame = +2
Query: 236 KMSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDA 415
K + AD AF K FL GG + + +T P + ++ QV + YK I A
Sbjct: 217 KFFSNADLTAFQKLFL-GGFTGIIGQTLTFPADVLRRRFQVNRIP---GIGHNYKNIKSA 272
Query: 416 FVRIPKEQGLLSFWRGNFANDIRYFPTQALNF 511
I K +G+ F+RG +N ++ P ++ +
Sbjct: 273 IFHIYKTEGINGFFRGYSSNMLKIIPVMSITW 304
Score = 29.5 bits (63), Expect = 0.46
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = +3
Query: 606 GGAAGATSLCFVYPLDFARTR 668
G AGA S YPLD ARTR
Sbjct: 122 GAIAGAASCATTYPLDIARTR 142
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 51.2 bits (117), Expect = 1e-07
Identities = 29/80 (36%), Positives = 43/80 (53%)
Frame = +2
Query: 272 KDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLS 451
K +AGG + V+K+ VAP++RVK+L Q H S + A R+ G+ A I GL
Sbjct: 19 KSGIAGGTAGCVAKSVVAPLDRVKILYQTNHASYRGYAYSRH-GLYKAIKHIYHVYGLHG 77
Query: 452 FWRGNFANDIRYFPTQALNF 511
++G+ A R FP + F
Sbjct: 78 LYQGHTATLYRVFPYAGIKF 97
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 603 SGGAAGATSLCFVYPLDFARTR 668
SG AG S+ F YPL+ R R
Sbjct: 122 SGSLAGTCSVFFTYPLELIRVR 143
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 42.7 bits (96), Expect = 5e-05
Identities = 23/93 (24%), Positives = 46/93 (49%)
Frame = +2
Query: 254 DPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPK 433
DP F++GGI+ VS+T AP++R+K++L + + + + ++ +
Sbjct: 123 DPKNNVGYFISGGIAGIVSRTCTAPLDRLKVML-ISDTGSKPSPKYPFATLLHTTKVLWN 181
Query: 434 EQGLLSFWRGNFANDIRYFPTQALNFAFKDKYK 532
G+ SF+ GN N ++ P ++ F + K
Sbjct: 182 RNGIRSFFVGNGINVLKVMPESSIKFGTYEAMK 214
Score = 39.5 bits (88), Expect = 4e-04
Identities = 21/82 (25%), Positives = 38/82 (46%)
Frame = +2
Query: 287 GGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGN 466
G +S + T V P+ ++ LQ Q S A Y G +D F + K +G ++G
Sbjct: 342 GALSGSTGATIVFPLNVIRTRLQTQGTSAHPAT---YDGFIDCFYKTTKNEGFRGLYKGL 398
Query: 467 FANDIRYFPTQALNFAFKDKYK 532
N ++ P+ A+++ + K
Sbjct: 399 SPNLLKVAPSVAISYLVYENCK 420
Score = 32.3 bits (70), Expect = 0.065
Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +2
Query: 278 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVR-IPKEQGLLSF 454
+LAGG++ +V++ + P++ +K +Q +S+ Q K I+ + + + K G+ +
Sbjct: 232 YLAGGMAGSVAQMFIYPVDTLKFRIQCSDLSR----GQHGKSIILSNAKELYKSVGIRGY 287
Query: 455 WRGNFANDIRYFPTQA 502
+RG + FP A
Sbjct: 288 YRGVLVGILGMFPYSA 303
Score = 25.4 bits (53), Expect = 7.5
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 603 SGGAAGATSLCFVYPLDFARTR 668
+GG AG+ + F+YP+D + R
Sbjct: 234 AGGMAGSVAQMFIYPVDTLKFR 255
>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 303
Score = 38.3 bits (85), Expect = 0.001
Identities = 23/78 (29%), Positives = 42/78 (53%)
Frame = +2
Query: 281 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 460
++GG+S A++ + P++ VK LLQ + S I ++ KG +D I G+ SF++
Sbjct: 209 ISGGLSGAIASSLTTPLDVVKTLLQTRG-SSSIPEVRKCKGSLDVVRFIYNYGGIPSFFK 267
Query: 461 GNFANDIRYFPTQALNFA 514
G + P A+++A
Sbjct: 268 GIRPRMVVAMPATAVSWA 285
Score = 37.1 bits (82), Expect = 0.002
Identities = 21/85 (24%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Frame = +2
Query: 281 LAGGISAAVSKTAVAPIERVKLLLQVQH-VSKQIAADQRYKGIVDAFVRIPKEQGLLSFW 457
LAG S + + + P++ +K +Q+ + VS+ ++ + IV++ ++I +G+ S W
Sbjct: 24 LAGAFSGILEHSVMYPVDAIKTRMQMLNGVSRSVSGN-----IVNSVIKISSTEGVYSLW 78
Query: 458 RGNFANDIRYFPTQALNFAFKDKYK 532
RG + + P+ A+ F+ + +K
Sbjct: 79 RGISSVIMGAGPSHAIYFSVLEFFK 103
>SPAC4G9.20c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 37.9 bits (84), Expect = 0.001
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +2
Query: 263 AFAKDFLAGGISAAVSKTAVA-PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQ 439
+F KDFLA G+S V++ V P + VK+ LQ Q I Y +D +I K +
Sbjct: 16 SFTKDFLA-GVSGGVAQVLVGQPFDCVKVRLQSQSNVSPI-----YNNALDCVKKISKNE 69
Query: 440 GLLSFWRG 463
GL +F++G
Sbjct: 70 GLAAFYKG 77
Score = 34.7 bits (76), Expect = 0.012
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +2
Query: 257 PVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKE 436
PV + +++G IS + V P+E V++ LQ+Q K + Y G D +I +
Sbjct: 109 PVTMPQYYVSGAISGLANSFLVGPVEHVRIRLQIQ-TGKNVL----YHGPWDCIKKISSQ 163
Query: 437 QGLLSFWRG 463
GL +G
Sbjct: 164 YGLSGIMKG 172
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 36.7 bits (81), Expect = 0.003
Identities = 22/84 (26%), Positives = 39/84 (46%)
Frame = +2
Query: 281 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 460
LAGGIS+ + + +AP + +K+ +Q+ S + F +++G+ + WR
Sbjct: 21 LAGGISSVICRFMIAPFDVIKIRMQITQSS-----------LRPVFKETVQKEGVRALWR 69
Query: 461 GNFANDIRYFPTQALNFAFKDKYK 532
GN ++ Y A F K K
Sbjct: 70 GNVVAELLYLVYGAAEFVAFSKLK 93
Score = 27.1 bits (57), Expect = 2.4
Identities = 19/71 (26%), Positives = 31/71 (43%)
Frame = +2
Query: 281 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 460
L+G I+ A SK + P++ V LQ YK D F+ I + G+ +R
Sbjct: 197 LSGVIAGAGSKAIMFPVDTVVKTLQT--------FPSNYKSFKDCFLSIYRNSGIKGLYR 248
Query: 461 GNFANDIRYFP 493
G + ++ P
Sbjct: 249 GLSVSMLKVAP 259
>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 320
Score = 36.7 bits (81), Expect = 0.003
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +2
Query: 278 FLAGGISAAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLLSF 454
FL+GG++A + T P E +K Q+Q ++K + + YK + AF I + +G+
Sbjct: 27 FLSGGLAACGAVTLTNPFEVIKTRFQLQGQLTKLDPSKRIYKSVGQAFSLIARHEGIRGL 86
Query: 455 WRG 463
RG
Sbjct: 87 QRG 89
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 36.3 bits (80), Expect = 0.004
Identities = 26/92 (28%), Positives = 39/92 (42%)
Frame = +2
Query: 254 DPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPK 433
D + F F AG ++ + P++ VK +Q+ V K Y G D +I K
Sbjct: 4 DNIPFPVTFAAGAVAGISEVLTLYPLDVVKTRMQLS-VGKS-----DYNGTFDCLKKIVK 57
Query: 434 EQGLLSFWRGNFANDIRYFPTQALNFAFKDKY 529
+G +RG + P +AL FA D Y
Sbjct: 58 NEGPHRLYRGILPPILMEAPKRALKFASNDTY 89
Score = 33.1 bits (72), Expect = 0.037
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
Frame = +2
Query: 269 AKDFLAGGISAAVSKTAVAPIERVKLLLQ-VQHVSKQIAADQRYKGIVDAFVRIPKEQGL 445
A L G + V P E +K+ LQ V++ SK Y G VD F +I K++ +
Sbjct: 105 ALSILTGSCAGFTETFVVVPFELMKIRLQDVKNASK-------YNGTVDCFTKIVKQERI 157
Query: 446 LSFWRGNFANDIRYFPTQALNFAFKDKYKPGVPSA 550
L+ + G A R+ A F K + + A
Sbjct: 158 LALYNGFEATMWRHVVWNAGYFGVIQKIRNSLTPA 192
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 591 VIWPSGGAAGATSLCFVYPLDFARTR 668
V + +G AG + + +YPLD +TR
Sbjct: 10 VTFAAGAVAGISEVLTLYPLDVVKTR 35
>SPAC19G12.05 |||mitochondrial citrate
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 35.1 bits (77), Expect = 0.009
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +2
Query: 278 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFW 457
FL G ++ ++ PI+ VK +Q ++A + YK + +I + GLL FW
Sbjct: 207 FLVGSVAGIITVYCTQPIDTVKSRMQ------SLSASKEYKNSIHCAYKILTQDGLLRFW 260
Query: 458 RG 463
G
Sbjct: 261 SG 262
Score = 29.9 bits (64), Expect = 0.35
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 603 SGGAAGATSLCFVYPLDFARTR 668
+GG AGA + YP +FA+TR
Sbjct: 23 AGGVAGAIEISITYPAEFAKTR 44
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 33.9 bits (74), Expect = 0.021
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
Frame = +2
Query: 272 KDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQR---YKGIVDAFVRIPKEQG 442
KD +AGG + S VAP++ VK Q Q + G + + I +G
Sbjct: 7 KDAIAGGAAGLASSLVVAPLDVVKTRKQAQKAFYSTGGGKNTMVLGGTLSSMRTIFHNEG 66
Query: 443 LLSFWRGNFANDIRYFPTQALNFAFKDKYK 532
+ +RG + Y P+ ++ F +K K
Sbjct: 67 IAGLYRGVGPMMLGYLPSWSIYFVVYEKCK 96
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 380 AADQRYKGIVDAFVRIPKEQGLLSFWRGNF 469
A Y DAF +I K +GL +F+RG F
Sbjct: 225 ACSPAYNNTFDAFRKIYKYEGLAAFYRGLF 254
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 603 SGGAAGATSLCFVYPLDFARTR 668
+GGAAG S V PLD +TR
Sbjct: 11 AGGAAGLASSLVVAPLDVVKTR 32
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 33.5 bits (73), Expect = 0.028
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 12/111 (10%)
Frame = +2
Query: 215 VKIT*SNKMSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVS----KQIA 382
V +T +N SN P + F+AGG++ + A AP++ VK LQ KQ A
Sbjct: 32 VLLTKANNASNERAPPPLSH-FIAGGVAGMLGAIATAPLDVVKTRLQSDFYKDRFLKQTA 90
Query: 383 ADQ-----RYKGIVDAFV---RIPKEQGLLSFWRGNFANDIRYFPTQALNF 511
+ Y+ +D + + +G + +RG N I P +++NF
Sbjct: 91 KSKSPLTAAYRHFMDTCIILKNVKVHEGTRALFRGLGPNLIGTIPARSINF 141
Score = 28.3 bits (60), Expect = 1.1
Identities = 19/74 (25%), Positives = 34/74 (45%)
Frame = +2
Query: 290 GISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNF 469
GI+ ++ P E V+ L+ S I +Y G++ F + EQG++ + G
Sbjct: 280 GIAKFMAAGIAYPHEVVRTRLRQ---SPSINGTPKYTGLIQCFKLVWMEQGIVGLYGGLT 336
Query: 470 ANDIRYFPTQALNF 511
A+ +R P + F
Sbjct: 337 AHLLRVVPNACILF 350
>SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 26.2 bits (55), Expect = 4.3
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Frame = -2
Query: 552 TAEGTPGLYLSLKAKLS---AWVGKY 484
T GTP +YL ++ KLS AW+ Y
Sbjct: 179 TVNGTPSIYLDVRPKLSVHGAWMRVY 204
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 26.2 bits (55), Expect = 4.3
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +1
Query: 115 YEITPNLLFKNQELVFRDPPSACAATPTSTY 207
YE+ N F N PP AC+ TS Y
Sbjct: 362 YEMKQNDAFNNNNPATATPPPACSLLETSWY 392
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 25.8 bits (54), Expect = 5.6
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = -2
Query: 594 LPAKVTPELRSLVNTAEGTPGLYLSLKAKLSAWVGKYLMSLAKLPRQNERRPCSLGIRTK 415
+P +PELRS N A Y + + L++ G+ L++ + R + + RTK
Sbjct: 244 MPKWASPELRSEENKAHKHMEQYFDINSSLNSHNGQSLLAERRNKRYTRKEMEQMKRRTK 303
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = +1
Query: 598 GLPVVPPEPP--LCASCTPSTSHVP 666
G P+VPP PP + AS +P+ + +P
Sbjct: 285 GAPLVPPPPPGMVMASPSPAAATIP 309
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 420 TKASTIPL*RWSAAICLLTCCTWSSSLTRSMGATAV 313
T+ + + + WSA I +LT C SLT S+ T +
Sbjct: 533 TEENVVYVGLWSADIIMLTYCQDGISLTHSLKLTDI 568
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 25.4 bits (53), Expect = 7.5
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +2
Query: 518 KDKYKPGVPSAVLTRERSSGVTFAGNLAFRWCR 616
KD PS +L R T AGNLA CR
Sbjct: 1168 KDFAAESNPSRLLLAARQMAKTLAGNLAMVTCR 1200
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,783,646
Number of Sequences: 5004
Number of extensions: 57151
Number of successful extensions: 214
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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