Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4971
         (670 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   180   1e-47
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   180   1e-47
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   6.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.0  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  180 bits (437), Expect = 1e-47
 Identities = 82/98 (83%), Positives = 91/98 (92%)
 Frame = +2

Query: 239 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 418
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 419 VRIPKEQGLLSFWRGNFANDIRYFPTQALNFAFKDKYK 532
           VRIPKEQG LS+WRGN AN IRYFPTQALNFAFKDKYK
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYK 98



 Score = 50.4 bits (115), Expect = 2e-08
 Identities = 22/22 (100%), Positives = 22/22 (100%)
 Frame = +3

Query: 603 SGGAAGATSLCFVYPLDFARTR 668
           SGGAAGATSLCFVYPLDFARTR
Sbjct: 121 SGGAAGATSLCFVYPLDFARTR 142



 Score = 27.9 bits (59), Expect = 0.092
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = +1

Query: 547 GGVDKRTQFWRYF 585
           GGVDK TQF RYF
Sbjct: 103 GGVDKNTQFLRYF 115



 Score = 25.0 bits (52), Expect = 0.65
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = +2

Query: 326 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANDIR 484
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N +R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  180 bits (437), Expect = 1e-47
 Identities = 82/98 (83%), Positives = 91/98 (92%)
 Frame = +2

Query: 239 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 418
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 419 VRIPKEQGLLSFWRGNFANDIRYFPTQALNFAFKDKYK 532
           VRIPKEQG LS+WRGN AN IRYFPTQALNFAFKDKYK
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYK 98



 Score = 50.4 bits (115), Expect = 2e-08
 Identities = 22/22 (100%), Positives = 22/22 (100%)
 Frame = +3

Query: 603 SGGAAGATSLCFVYPLDFARTR 668
           SGGAAGATSLCFVYPLDFARTR
Sbjct: 121 SGGAAGATSLCFVYPLDFARTR 142



 Score = 27.9 bits (59), Expect = 0.092
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = +1

Query: 547 GGVDKRTQFWRYF 585
           GGVDK TQF RYF
Sbjct: 103 GGVDKNTQFLRYF 115



 Score = 25.0 bits (52), Expect = 0.65
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = +2

Query: 326 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANDIR 484
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N +R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 386 DQRYKGI-VDAFVRIPKEQGLLSFWRGNFANDIRYFPTQALN 508
           DQ+Y+ + V+ + ++ KEQG +S   G    ++   P   +N
Sbjct: 666 DQQYQVVSVEQYQQL-KEQGQISQVGGGIQQNVEVLPENLVN 706


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 601  LPVVPPEPPLCASCTPSTSHV 663
            +P +PPE   CA+ T  +  V
Sbjct: 1110 VPSIPPEDVRCAALTSQSLQV 1130


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 601  LPVVPPEPPLCASCTPSTSHV 663
            +P +PPE   CA+ T  +  V
Sbjct: 1106 VPSIPPEDVRCAALTSQSLQV 1126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,811
Number of Sequences: 438
Number of extensions: 4419
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)