Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4969
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1307 + 29218055-29218159,29218249-29218362,29218448-292186...    31   0.53 
01_07_0231 + 42176598-42178117,42178232-42179753                       29   2.8  
01_01_0499 - 3675303-3675484,3676888-3676982,3677046-3677096,367...    29   3.7  
11_04_0442 - 17790811-17790889,17791047-17791114,17791144-177911...    28   6.5  
10_02_0197 + 6596197-6596402,6596766-6596828,6599679-6599795,660...    28   6.5  
10_02_0194 + 6552638-6552895,6553088-6553246,6553551-6553702,655...    27   8.6  

>06_03_1307 +
           29218055-29218159,29218249-29218362,29218448-29218660,
           29218967-29219457,29219653-29219752,29219835-29219894,
           29220055-29220147,29220270-29220368,29220484-29220804
          Length = 531

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +2

Query: 449 LHCRFRKGFFSVSTFPHWISFITGSDY*TFYLLCLSEINSERFG 580
           LHC F +GF   ++FP WIS        TF   C+S+      G
Sbjct: 464 LHC-FARGFVDDNSFPIWISHFLPQQQATFVEHCVSQRRQSLLG 506


>01_07_0231 + 42176598-42178117,42178232-42179753
          Length = 1013

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -1

Query: 325 PYLKPVEGYHLSPCLFVLLSDYLP 254
           P L P++GY+ +P L +L++DY P
Sbjct: 775 PNLLPLKGYYWTPQLQLLITDYAP 798


>01_01_0499 -
           3675303-3675484,3676888-3676982,3677046-3677096,
           3677191-3677270,3677423-3677593,3677836-3677937,
           3678092-3678244,3678392-3678523,3678702-3678788,
           3678987-3679126,3679246-3679660
          Length = 535

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
 Frame = -1

Query: 307 EGYHLSPCLFVLLSDYLPESIVMRKXXXXXXXXXYKAKEFVCLNALIPGTTGPI*KILSV 128
           +GY+     F LL DY   S V+R+           AK   C    I  T   + K   V
Sbjct: 387 KGYYRQGMAFSLLQDYASASYVLRRALKLDPQNATVAKALRCYENKIYMTENVLEKRGDV 446

Query: 127 LDS--PFIEEGYKAI*HHAK 74
           L++  P +EE   A  H  K
Sbjct: 447 LETACPRMEESGLAFVHQKK 466


>11_04_0442 - 17790811-17790889,17791047-17791114,17791144-17791166,
            17791210-17795913,17797414-17797624,17798478-17798666
          Length = 1757

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/39 (43%), Positives = 24/39 (61%)
 Frame = +1

Query: 409  VLALLLMSVINLKASLSIPKGFFFCFNIPSLDFIYHRIG 525
            VLALL    I L ++ ++PKG  FC NI S +++   IG
Sbjct: 1223 VLALLKCIRIYLASTAALPKG--FCENIASKEWLKTTIG 1259


>10_02_0197 +
           6596197-6596402,6596766-6596828,6599679-6599795,
           6600311-6600545,6600771-6600929,6601159-6601310,
           6602511-6602571
          Length = 330

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 404 CY*LNKSKILKTYHYLFIFAFFTCVFSVFEAS 309
           C+ L +SK+LK Y Y +  +  TC+   F+ +
Sbjct: 202 CWYLVQSKVLKVYPYKYWSSMITCLVGGFQVA 233


>10_02_0194 +
           6552638-6552895,6553088-6553246,6553551-6553702,
           6553741-6553804
          Length = 210

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 404 CY*LNKSKILKTYHYLFIFAFFTCVFSVFEAS 309
           C+ L +SK+LK Y Y +  +  TC+   F+ +
Sbjct: 81  CWYLVQSKVLKVYPYKYWSSMVTCLVGGFQTA 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,087,777
Number of Sequences: 37544
Number of extensions: 229546
Number of successful extensions: 418
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)