Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4968
         (507 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    26   3.7  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    25   4.9  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    25   6.5  
SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa...    25   8.6  

>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 444 ICLSPI*SGAESSRGITLTVGRFFKSLAYGIYILPDY 334
           +CLS   S A  S+GI+L   RF  + +   Y+ P Y
Sbjct: 3   LCLSGS-SQAIPSKGISLVAARFQSTASRASYVTPPY 38


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 353 IPYAKDLKNRPTVRVIPRELSAP 421
           +P A  +  RP V V+P  LS P
Sbjct: 553 VPEAPSVPQRPAVPVVPEALSVP 575


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 12/37 (32%), Positives = 15/37 (40%)
 Frame = -3

Query: 139 FSLKMDGGVDVYGLRQSSK*YKKRKMVCIYENVCAES 29
           FS K+D       L        K    C+YE +C ES
Sbjct: 83  FSSKLDAFAQTLDLEWQIASMHKEAAACVYEFLCVES 119


>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 273 KYVIPQLRLALQLWQSQRKHNSLVKYISRMLKT*RIVPP 389
           +Y IP+L + LQ   S   H+ +V+  SR  +  R  PP
Sbjct: 61  EYTIPKLYIKLQYCVSCAIHSRVVRVRSREGRRIRTPPP 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,062,629
Number of Sequences: 5004
Number of extensions: 39342
Number of successful extensions: 96
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)