Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4968
         (507 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-53|CAB16519.2|  677|Caenorhabditis elegans Hypothetical p...    29   1.5  
AF016435-4|AAB65880.2|  330|Caenorhabditis elegans Serpentine re...    27   5.9  

>Z99281-53|CAB16519.2|  677|Caenorhabditis elegans Hypothetical
           protein Y57G11C.18 protein.
          Length = 677

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 22/64 (34%), Positives = 32/64 (50%)
 Frame = -3

Query: 193 FGLKSGADVVLLLNETLEFSLKMDGGVDVYGLRQSSK*YKKRKMVCIYENVCAESDNKNR 14
           F +  G   VLL N T+E++ K+     + G  QS K    RK   I EN C+E+  K  
Sbjct: 152 FNVADGVFTVLLQNGTIEYNNKVLAQTSIIGATQSGKTTLLRK---ILEN-CSETFEKPI 207

Query: 13  *DVF 2
            ++F
Sbjct: 208 DNIF 211


>AF016435-4|AAB65880.2|  330|Caenorhabditis elegans Serpentine
           receptor, class w protein8 protein.
          Length = 330

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -1

Query: 411 SSRGITLTVGR--FFKSLAYGIYILPDYYVFVD 319
           S+ G+ L +    FF    YG++   DYYV+ D
Sbjct: 261 STSGLILLMATTAFFSETIYGVFYFLDYYVYYD 293


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,525,781
Number of Sequences: 27780
Number of extensions: 226328
Number of successful extensions: 495
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)