Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4965
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c...    27   2.0  
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    27   2.6  
SPBC83.10 |||conserved eukaryotic protein|Schizosaccharomyces po...    27   3.4  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    26   6.0  
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    25   7.9  
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc...    25   7.9  

>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 438

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 424 MSHSNVKSSVMYPYYQLPVDKLHV 495
           M H+  K S++Y  + LPV +LH+
Sbjct: 279 MFHTEFKCSILYDIWMLPVRQLHL 302


>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 75  HLQTPEWFKYNEQGSHRKASREWFGG 152
           HL +    KYN   +HR AS  W+ G
Sbjct: 141 HLSSSSLSKYNHHSNHRLASPGWWYG 166


>SPBC83.10 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 189

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +1

Query: 385 FAVAVHEIGHSLGMSHSNVKSSVMYPYYQLPVDK 486
           + + +  I +     H  +  S++YPYY  P +K
Sbjct: 77  YFLRLESIDYEFSEFHIIINESIVYPYYTSPAEK 110


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 391 VAVHEIGHSLGMSHSNVKSS 450
           V  HEIGH LG+ H   K S
Sbjct: 226 VVAHEIGHILGLIHDCNKKS 245


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +1

Query: 58  WNKREVTYR-LLNGSSTMSKDRIERLLENGLEVW 156
           W   E+  R  ++ SST   + +E+   NGLE W
Sbjct: 491 WIFEEIEARQFIDKSSTQRLEMLEQYCNNGLEYW 524


>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +1

Query: 91  NGSSTMSKDRIERLLENGLE-VWAPHGNLHFTKLDEGKADIQVYFASGNHGDGFPFDGPG 267
           NG+ST      E L + G+  V+ P G  H  K  + + DI VYF +  HG     D   
Sbjct: 322 NGAST------EYLQDLGITTVFTPTGVKHLHKAAK-EFDIGVYFEANGHGTVLFSDKAL 374

Query: 268 RVVAHAFPPP 297
             +AH F  P
Sbjct: 375 ANLAHPFFTP 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.137    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,845,515
Number of Sequences: 5004
Number of extensions: 57833
Number of successful extensions: 182
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)