Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4965
(699 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0697 - 30999644-31000762 101 7e-22
06_01_0940 + 7235801-7236916 100 1e-21
10_08_0900 - 21436508-21437521 96 2e-20
10_08_0901 - 21443224-21444085,21444804-21444998,21445189-214452... 96 3e-20
10_08_0164 - 15347180-15347446 29 2.7
06_02_0148 - 12280794-12280962,12281102-12281210,12281283-122813... 29 2.7
05_03_0644 + 16527364-16527961,16528048-16528622,16528710-16528877 29 2.7
12_02_0931 + 24512496-24512567,24512705-24512806,24512939-245129... 29 4.7
04_04_1242 - 32016553-32016857,32017628-32017784,32017871-320180... 29 4.7
05_01_0160 + 1081416-1081647,1081840-1082012,1082169-1082246,108... 28 6.2
11_06_0027 + 19363678-19363698,19364442-19364484,19366240-193662... 28 8.2
>02_05_0697 - 30999644-31000762
Length = 372
Score = 101 bits (241), Expect = 7e-22
Identities = 59/159 (37%), Positives = 79/159 (49%), Gaps = 5/159 (3%)
Frame = +1
Query: 64 KREVTYRLLNGSST-MSKDRIERLLENGLEVWAPHGNLHFTKLDEGK-ADIQVYFASGNH 237
+R + Y + S+T + + + + WA L FT++ ADI + F SG+H
Sbjct: 164 RRNLRYAITATSATSIDRATLSAVFARAFSRWAAATRLQFTEVSSASNADITIGFYSGDH 223
Query: 238 GDGFPFDGPGRVVAHAFPPPLGDIHFDDDETW-GVXXXXXXXXXXXXXXFFAVAVHEIGH 414
GDG FDGP +AHAF P G H D E W +VAVHEIGH
Sbjct: 224 GDGEAFDGPLGTLAHAFSPTDGRFHLDAAEAWVASGDVSTSSSFGTAVDLESVAVHEIGH 283
Query: 415 SLGMSHSNVKSSVMYPYYQLPVDK--LHVDDILGMQELY 525
LG+ HS+V S+MYP + K L DD+LG+Q LY
Sbjct: 284 LLGLGHSSVPDSIMYPTIRTGTRKVDLESDDVLGIQSLY 322
>06_01_0940 + 7235801-7236916
Length = 371
Score = 100 bits (240), Expect = 1e-21
Identities = 65/203 (32%), Positives = 94/203 (46%), Gaps = 9/203 (4%)
Frame = +1
Query: 58 WNKREVTYRL-LNGSSTMSKDR--IERLLENGLEVWAPHGNLHFTKL-DEGKADIQVYFA 225
W + T R + +S S DR + ++ + W+ L+FT+ ADI + F
Sbjct: 160 WPRSRTTLRYAITATSQTSIDRATLSKVFASAFARWSAATTLNFTEAASAADADITIGFY 219
Query: 226 SGNHGDGFPFDGPGRVVAHAFPPPLGDIHFDDDETWGVXXXXXXXXXXXXXXFFAVAVHE 405
G+HGDG FDGP +AHAF P G +H D E W +VAVHE
Sbjct: 220 GGDHGDGEAFDGPLGTLAHAFSPTNGRLHLDASEAWVAGGDVTRASSNAAVDLESVAVHE 279
Query: 406 IGHSLGMSHSNVKSSVMYPYYQLPVDKLHV--DDILGMQELY---LNVKGSEESEGTERT 570
IGH LG+ HS+ S+M+P K+++ DD+ G+Q LY N KG + R
Sbjct: 280 IGHILGLGHSSAADSIMFPTLTSRTKKVNLATDDVAGIQGLYGNNPNFKGVTPPATSSRE 339
Query: 571 VGSSQAPRFTKTDSEEFDDAPDL 639
+ S+ A ++ D A L
Sbjct: 340 MDSAGAGELSRPWRRLLDGAAGL 362
>10_08_0900 - 21436508-21437521
Length = 337
Score = 96.3 bits (229), Expect = 2e-20
Identities = 63/163 (38%), Positives = 85/163 (52%), Gaps = 5/163 (3%)
Frame = +1
Query: 121 IERLLENGLEVWAPHGNLHFTKLDEGKA-DIQVYFASGNHGDGFPFDGPGRVVAHAFPPP 297
+ + + WA + F + D+ +A DI+V F +GNHGDG PFDGP ++ HAF P
Sbjct: 159 VRAVFQRAFARWARTIPVGFVETDDYEAADIKVGFYAGNHGDGVPFDGPLGILGHAFSPK 218
Query: 298 LGDIHFDDDETWGVXXXXXXXXXXXXXXFFAVAVHEIGHSLGMSHSNVKSSVMYPYYQLP 477
G +H D E W V +VA HEIGH LG+ HS +VMYP + P
Sbjct: 219 NGRLHLDASEHWAVDFDVDATASAIDLE--SVATHEIGHVLGLGHSASPRAVMYPSIK-P 275
Query: 478 VDK---LHVDDILGMQELY-LNVKGSEESEGTERTVGSSQAPR 594
+K L VDD+ G+Q LY N + S S + T SS +PR
Sbjct: 276 REKKVRLTVDDVEGVQALYGSNPQFSLSSLSEQGT--SSSSPR 316
>10_08_0901 -
21443224-21444085,21444804-21444998,21445189-21445259,
21446293-21447094,21447687-21447723,21448270-21449023
Length = 906
Score = 95.9 bits (228), Expect = 3e-20
Identities = 54/112 (48%), Positives = 64/112 (57%), Gaps = 3/112 (2%)
Frame = +1
Query: 199 KADIQV-YFASGNHGDGFPFDGPGRVVAHAFPPPLGDIHFDDDETWGVXXXXXXXXXXXX 375
+ADI+V ++ +G HGDG PFDGP V AHA P G I FD E W V
Sbjct: 116 EADIRVGFYGAGEHGDGHPFDGPLNVYAHATGPEDGRIDFDAAERWAVDLAADASPAAVD 175
Query: 376 XXFFAVAVHEIGHSLGMSHSNVKSSVMYPYYQLPVDK--LHVDDILGMQELY 525
VA HEIGH+LG+ HS +SSVMYPY K L VDD+ G+QELY
Sbjct: 176 LE--TVATHEIGHALGLDHSTSESSVMYPYVGTRERKVRLTVDDVEGIQELY 225
Score = 69.7 bits (163), Expect = 2e-12
Identities = 57/169 (33%), Positives = 80/169 (47%), Gaps = 13/169 (7%)
Frame = +1
Query: 58 WNKREV--TYRL--LNGSSTMSKDRIERLLENGLEVWAPHGNLHFTKLDE-GKADIQVYF 222
WN+ ++ TY + L + + +D + + L WA L F + +ADI+V F
Sbjct: 679 WNRPDMRLTYAVSPLATADHLPRDAVREAFRSALARWAEVTPLRFAEAARYEEADIRVGF 738
Query: 223 ----ASGN-HGDGFPFDGPGR-VVAHAFPPPLGDIHFDDDETWGVXXXXXXXXXXXXXX- 381
A G G G G +AHA PP G IH W V
Sbjct: 739 YLHTADGKCDACGCVCKGGGEEALAHAHPPQDGRIHLHAARKWAVTNVAGAGGDAPPLAV 798
Query: 382 -FFAVAVHEIGHSLGMSHSNVKSSVMYPYYQLPVDKLHVDDILGMQELY 525
+VAVHEIGH+LG+ HS+ +SS+MY +Y+ V L DD+ G+QELY
Sbjct: 799 DLESVAVHEIGHALGLGHSSSESSMMYRHYRGKV-SLTDDDVKGVQELY 846
Score = 55.6 bits (128), Expect = 4e-08
Identities = 34/88 (38%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Frame = +1
Query: 271 VVAHA-FPPPLGDIHFDDDETWGVXXXXXXXXXXXXXXFFAVAVHEIGHSLGMSHSNVKS 447
V+AH+ P G IH W V +VA HEIGH LG+ HS+ +S
Sbjct: 400 VLAHSSMPEKSGQIHLHAAHRWTVNLAADTAPLAVDLE--SVAAHEIGHVLGLDHSSSRS 457
Query: 448 SVMYPYYQLPVDK--LHVDDILGMQELY 525
S+MYP+ K L DD+ G+QELY
Sbjct: 458 SMMYPFISCRERKVRLTTDDVHGIQELY 485
>10_08_0164 - 15347180-15347446
Length = 88
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 222 RFRQPWRRVPLRWPWSSSGSRV 287
R++QPW PL + W S SRV
Sbjct: 18 RWQQPWHMSPLGFDWRGSSSRV 39
>06_02_0148 -
12280794-12280962,12281102-12281210,12281283-12281385,
12281587-12281618,12281709-12281926,12282035-12282150,
12282428-12282683,12282912-12282999,12283393-12283468,
12283562-12283620,12285236-12285305,12285399-12285539
Length = 478
Score = 29.5 bits (63), Expect = 2.7
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +1
Query: 439 VKSSVMYPYYQLPVDKLHVDDILG-MQELYLNVKGSEESEGTERTVGSSQAPRFTKTDSE 615
+ S+ M PY DK L M +++ + + RT+ ++ PRFTK S+
Sbjct: 241 IVSNWMIPYEDSKEDKHATKRALDFMYGWFMDPLTKGDYPVSMRTLVGNRLPRFTKEQSK 300
Query: 616 EFDDAPDLCMTNYDTLQVIHG 678
+ + D NY T + I G
Sbjct: 301 AINGSFDFIGLNYYTARYIQG 321
>05_03_0644 + 16527364-16527961,16528048-16528622,16528710-16528877
Length = 446
Score = 29.5 bits (63), Expect = 2.7
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Frame = +1
Query: 502 ILGMQELY-LNVKGSEESEG-TERTVGS---SQAPRFTKTDS---EEFDDAPDLC--MTN 651
I+ ++ LY +N +G ES TE VGS + AP + DS EEFD LC +
Sbjct: 375 IVALRVLYGINGQGIWESIAQTENAVGSDPEASAPHSIEPDSNNSEEFDARELLCTLAAS 434
Query: 652 YDTLQVIHG 678
YD + V HG
Sbjct: 435 YDKINVGHG 443
>12_02_0931 +
24512496-24512567,24512705-24512806,24512939-24512984,
24513292-24513355,24513997-24514348,24514497-24514749,
24515069-24515311,24515399-24515518,24515710-24516158
Length = 566
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +1
Query: 22 HARNR--RYIIQEGWNKREVTYRLLNGSSTMSKDRIERLLENGLEVWAPHGNLHF 180
H RN + +++EG N + S KD IE LENG+ W + +H+
Sbjct: 107 HGRNLFLQSLVEEGQNPSTSNGGSNSQKSVEYKDLIE-CLENGINFWTDYSKVHY 160
>04_04_1242 - 32016553-32016857,32017628-32017784,32017871-32018089,
32018184-32018470,32018629-32019934,32020021-32020178,
32020250-32020335,32023106-32023173,32023297-32023340,
32023418-32023490,32023605-32023684,32023774-32023867,
32023981-32024151,32024463-32024557,32025049-32025128,
32025137-32025333,32025896-32026183
Length = 1235
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +3
Query: 117 SHRKASRE-WFGGLGAPREPPLHET 188
S RK SR+ FG +G PR P LH T
Sbjct: 1144 SPRKLSRQNSFGSIGTPRTPNLHST 1168
>05_01_0160 +
1081416-1081647,1081840-1082012,1082169-1082246,
1082372-1082529,1082558-1082709,1083232-1083290,
1083633-1083912,1084235-1084470,1084601-1084744,
1084845-1085012
Length = 559
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 175 GGSRGAPKPPNHSLEAFLCDPCSLYLNHSGVCK 77
GGS+GA PP + + CD CS+ + G+ +
Sbjct: 96 GGSKGAA-PPARDIRRYKCDFCSVVRSKKGLIR 127
>11_06_0027 +
19363678-19363698,19364442-19364484,19366240-19366276,
19366359-19366602,19366749-19366765,19366901-19366986,
19367347-19367378,19367455-19367615,19367722-19367818,
19367894-19368085,19368172-19368233,19368302-19368448,
19368776-19369589
Length = 650
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +1
Query: 385 FAVAVHEIGHSLGMSHSNVKSSVMYPYYQLPVDKLHVDDILGMQELYLNVKGSEESEGTE 564
F + VHE G G S VK++ Y V +++ + +LG Q L EE++ +
Sbjct: 280 FGIIVHEGGVIGGHYRSYVKTNCWYEVSDRDVKRVNENFVLGAQAYILFYNRKEEAKSFD 339
Query: 565 RTV 573
+
Sbjct: 340 EVL 342
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.137 0.417
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,451,525
Number of Sequences: 37544
Number of extensions: 429007
Number of successful extensions: 1318
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1309
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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