Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4963
(813 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 27 0.27
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 24 1.5
DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 22 5.9
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.8
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.8
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.8
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.8
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.8
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.8
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 7.8
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 7.8
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 26.6 bits (56), Expect = 0.27
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = -2
Query: 437 ESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSSGTS 267
+ ++QQ+R + ++ LR E + V E GG G+ D S ++ T+
Sbjct: 165 QQQQQQQRQQQRQEERRLRPDEIKVEVGEDEFANGGAARDESKAGSTDASTPATVTT 221
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 24.2 bits (50), Expect = 1.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -1
Query: 60 WRQTAFCFYKVRRATTKN 7
W Q FC+++ AT KN
Sbjct: 533 WFQNTFCYFRRNAATWKN 550
Score = 23.0 bits (47), Expect = 3.4
Identities = 9/28 (32%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -2
Query: 458 FLKVNSLESEEQQERHHK-TEQTHSLRQ 378
F++ +SL ++QQ++HH+ + H+ Q
Sbjct: 91 FMQQHSLYLQQQQQQHHQDSSSEHASNQ 118
>DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex
determiner protein.
Length = 186
Score = 22.2 bits (45), Expect = 5.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 716 KIMLSISARTLQNSMTYK 769
KI+ S+S RT+ N+ YK
Sbjct: 80 KIISSLSNRTIHNNNNYK 97
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.8
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +1
Query: 7 VLCCRAPHLI 36
V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.8
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +1
Query: 7 VLCCRAPHLI 36
V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.8
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +1
Query: 7 VLCCRAPHLI 36
V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.8
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +1
Query: 7 VLCCRAPHLI 36
V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.8
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +1
Query: 7 VLCCRAPHLI 36
V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.8
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +1
Query: 7 VLCCRAPHLI 36
V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 7.8
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +1
Query: 7 VLCCRAPHLI 36
V+ CRAPH+I
Sbjct: 518 VILCRAPHII 527
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 7.8
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +1
Query: 7 VLCCRAPHLI 36
V+ CRAPH+I
Sbjct: 518 VILCRAPHII 527
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,952
Number of Sequences: 438
Number of extensions: 4982
Number of successful extensions: 22
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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