Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4961
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1084 + 27483276-27483492,27483991-27484121,27484685-274847...    31   0.67 

>06_03_1084 +
           27483276-27483492,27483991-27484121,27484685-27484740,
           27484834-27484891,27484970-27485113,27485270-27485353,
           27485434-27485514,27485776-27485889,27486196-27486281,
           27486376-27486436,27487343-27487525,27487987-27488038,
           27488080-27488135,27488197-27488258,27488498-27488581,
           27488899-27489030,27490220-27490316
          Length = 565

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 462 GSHRVNIVKRWFSITRRGRNNVTCCM 539
           G HR+ ++  + + +RRGR+ V CC+
Sbjct: 29  GGHRIRLLHAFSAASRRGRHEVACCV 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,837,415
Number of Sequences: 37544
Number of extensions: 299366
Number of successful extensions: 452
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)