Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4961
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    25   0.52 
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    25   0.91 
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    25   0.91 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   6.4  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 33  YSDWSNWHFPN 1
           Y DW +W FPN
Sbjct: 859 YEDWRHWKFPN 869


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 641 GYFQTETHSNNAFCL 685
           G   T TH+ NAFCL
Sbjct: 32  GLMNTMTHTTNAFCL 46


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 641 GYFQTETHSNNAFCL 685
           G   T TH+ NAFCL
Sbjct: 31  GLMNTMTHTTNAFCL 45


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +2

Query: 164 IWSFKIEFIISL 199
           +WS KIEFI+S+
Sbjct: 21  MWSSKIEFILSV 32


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +2

Query: 164 IWSFKIEFIISL 199
           +WS KIEFI+S+
Sbjct: 74  MWSSKIEFILSV 85


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 213 SPLRGALK*HVDFSLRSSY*GARICRL*DESENA 314
           SP+ GA K H D  LR     + +  + D  +NA
Sbjct: 364 SPVTGASKSHGDLELRQRSSKSLLANVLDLEDNA 397


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,025
Number of Sequences: 438
Number of extensions: 3513
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)