Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4956
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.6  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   6.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   6.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   6.4  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 556  EGCDASSH*GTASRGSWLAGTFALNISKR 470
            +G  +S     +S GSW AGT +    KR
Sbjct: 1064 DGITSSGSDSGSSNGSWTAGTVSQQKQKR 1092


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 13/55 (23%), Positives = 25/55 (45%)
 Frame = +1

Query: 481 YLKQKFQPAKNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQPLNV 645
           Y+ Q  +P   R+++ P     +N     P+P+P      R P+     N+P+ +
Sbjct: 105 YIPQP-RPPHPRLRREPEAEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRPVYI 158


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 15/58 (25%), Positives = 24/58 (41%)
 Frame = +1

Query: 469 VSWRYLKQKFQPAKNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQPLN 642
           +++R    + Q  +  V+ Y       +     P P   L L   +PD LRR  Q +N
Sbjct: 284 IAFRTPTYRMQQVEQPVQVYIQLKRPSDGATSEPFPFLMLPLGADDPDSLRRKRQKIN 341


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
 Frame = -2

Query: 155 AEATPASIRTHTNPDISL-FSKAPCTFSQEQTQA 57
           AEA PA I  HT   + L  +  P      Q QA
Sbjct: 656 AEAEPAVIVQHTQSQLHLHLTSPPARSPSSQAQA 689


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,716
Number of Sequences: 438
Number of extensions: 3996
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)