Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4954
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    27   2.8  
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po...    26   4.9  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    25   6.4  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    25   6.4  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   8.5  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    25   8.5  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   8.5  

>SPBC215.08c |arg4||carbamoyl-phosphate synthase
            Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 97   FAQTIRSAMWTPSLSTPHREMPIPGMG 177
            F + ++ A W    ST + ++P+PG G
Sbjct: 996  FGKDVKEAYWAALQSTQNFKIPLPGQG 1022


>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 742

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +2

Query: 200 IARAASNSVPKYPADFPAALCPNY--PYCW*IHKLPTLINNKSTIF 331
           I+ AA+N V +Y   F  ++  N+  P  W I  L   INN ST+F
Sbjct: 410 ISTAAANGVYEY---FDKSMKKNWAGPEHWRIQALRKNINNASTVF 452


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 130 PSLSTPHREMPIPGMGAQPSHPANRS 207
           PSL +   E+P  G   QP +P N S
Sbjct: 327 PSLESGKAELPTDGSFEQPGYPMNPS 352


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 170 EWVRNPAILPIARAASNSVPKYPADFPAALCP 265
           +W    A L +  + ++S PK  AD+ AAL P
Sbjct: 151 KWPSKVAALQLLGSLASSSPKAVADYMAALIP 182


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -3

Query: 399 STVTWLINVFNLLNYIYKKCTSAKIVDLLLISVGSL 292
           S+ T   +VFN L ++Y K TS KI++ L+  +G L
Sbjct: 347 SSGTVYFSVFNSLFFMYSKLTS-KILNTLVGGLGIL 381


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 408 DDNSTVTWLINVFNLLNYIYKKCTSAKIVDL 316
           +D+ TVTWL        YI++   S +I ++
Sbjct: 216 NDSETVTWLNTFLQQFWYIFEPSLSERITEI 246


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 130  PSLSTPHREMPIPGMGAQPS 189
            PS+STP   +P P   A PS
Sbjct: 1247 PSVSTPRSSVPSPHSNASPS 1266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,823,139
Number of Sequences: 5004
Number of extensions: 62999
Number of successful extensions: 181
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)